2026
A template/ approach to Reproducible Generative Research: Architecture and Ergonomics from Configuration through Publication
Source
Computational · Zenodo
2026
Active Inference Journal — 500+ videos on Active Inference with transcripts
Source
Media & Teaching · YouTube
2026
Before Pragmatism Had a Name: Blake's "America A Prophecy" Anticipates American Anticipatory Epistemology
Source
Art & Synergetics · Zenodo
2026
The Golden Compass and the Lunar Flux: William Blake, Bimetallic Meta-stability, and the Architecture of Value
Source
Art & Synergetics · Zenodo
2026
Cognitive Integrity Framework: Formal Foundations for Multiagent Security (Part 1: Theory)
Source
Cognitive Security · Zenodo
2026
Personal YouTube — 200+ livestreams: drawings, Synergetics, paper discussions
Source
Media & Teaching · YouTube
2026
The Doors of Perception are the Threshold of Prediction: Active Inference and William Blake's Theory of Seeing
Source
Art & Synergetics · Zenodo
2026
Ento-Linguistics: Language, Ambiguity, and Scientific Communication in Entomology
Source
Entomology · Zenodo
2026
A Living Meta-Analysis Architecture for Active Inference: Assertion Extraction, Nanopublications, and Hypothesis Scoring
Source
Active Inference · Active Inference Journal
2026
Dynamic Attentional Agents in Focused Attention Meditation: Hierarchical Computational Modeling of Expert-Novice Differences
Source
Active Inference · CSCIS vol 2857, Springer
2026
Cognitive Diagrams: Reviewing Categorical Accounts of Linguistic Case
Source
Active Inference · Active Inference Journal
2026
Towards Lean 4 Formalization of the Free Energy Principle: AI-Driven Theorem Sketching and Verification for Active Inference and Bayesian Mechanics
Source
Active Inference · Active Inference Journal
2026
The Architecture of False Gods: William Blake, Professor Jiang, and the Active Inference Corrective to Single Vision
Source
Art & Synergetics · Zenodo
2026
Crescent City in Living Waves: Space, Time, People, and Minds on the Southern Cascadian Coast
Source
Cognitive Security · Zenodo
2026
Introduction to Biology: A Generative Approach
Source
Computational · Zenodo
2026
Policy Entanglement in Active Inference
Source
Computational · Zenodo
2026
Bounded AutoResearch for a Tiny Reproducible Machine-Learning Task
Source
Computational · Zenodo
2026
Convergence Analysis of Gradient Descent Optimization
Source
Computational · Zenodo
2026
Editorial Quality at Scale: A Reproducible Prose-Review Pipeline
Source
Computational · Zenodo
2026
A template/ approach to Reproducible Generative Research
Source
Computational · Zenodo
2026
Active Inference Multi-Track Exemplar
Source
Computational · Zenodo
2026
BeeStack: An Evidence-Typed Scaffold for Whole-Colony Honeybee Simulation
Source
Computational · Zenodo
2026
When do bugs see (infra)red?
Source
Computational · Zenodo
2026
Self-Improvement Agent Harness: A Deterministic SIA Exemplar
Source
Computational · Zenodo
2026
The Music Never Stopped: A Grateful Data Compendium with a Category-Theoretic Interpretation
Source
Computational · Zenodo
2026
A Deterministic Testbed for Self-Organizing Agent-Team Coordination
Source
Computational · Zenodo
2026
Recovering LLM-Persona Accuracies from Unlabeled Votes
Source
Computational · Zenodo
2026
The Triplicate: A Data-Driven Large-Format Newspaper Layout Engine
Source
Computational · Zenodo
2026
The Template Textbook
Source
Computational · Zenodo
2026
iTrace: verification-first webcam eye-movement analysis
Source
Computational · Zenodo
2026
DemoCreate: Declarative Audio-Visual Demo Generation for Software
Source
Computational · Zenodo
2026
ENTO: an ENcrypted, Typed, Omnitrack container format for multimodal research data
Source
Computational · Zenodo
2026
GeneralizedNotationNotation (GNN)
Source
Active Inference · Zenodo
2026
COGANT: Deterministic Codebase-to-GNN Translation
Source
Computational · Zenodo
2026
AGEINT: Agentic Intelligence
Source
Computational · Zenodo
2026
On-Policy Distillation as Active Inference in Finite Variational Models
Source
Active Inference · Zenodo
2026
Template Madlib: Deterministic Token Injection for Conditional IMRAD Manuscripts
Source
Computational · Zenodo
2026
California Public Records: A Technical and Legal Reference for the Post-AB 473 Era
Source
Cognitive Security · Zenodo
2026
CogSecSkills: Multiharness Agentic Skills for Cognitive Security
Source
Cognitive Security · Zenodo
2026
Realizing Emptiness: Operational Surrogates for No-Self-Evidence, QRF Opacification, and Bayesian Model Reduction
Source
Computational · Zenodo
2026
A Living Meta-Analysis of the Modafinil Literature
Source
Computational · Zenodo
2026
Refinement of Gold: A Metallurgical Analogy for Scientific Manuscript Composition
Source
Computational · Zenodo
2026
AlphaCOGANT: Recursive Corporate Self-Improvement as Active Inference
Source
Computational · Zenodo
2026
Mapping William Blake's Works: Evidence ledgers, source provenance, text-image diagnostics, and rights-bounded release controls
Source
Computational · Zenodo
2026
Sortition Upstream of NTQR
Source
Computational · Zenodo
2026
Exploratory Data Analysis: A Reproducible Notebook Template
Source
Computational · Zenodo
2026
A Domain Language for Specifying Controlled Methods
Source
Computational · Zenodo
2026
Entomological Law: A Field Map of Insects as Evidence, Threat, Property, Product, Patient, and Weapon
Source
Computational · Zenodo
2026
The Shape Between: A Full-Page Illustrated Storybook Template
Source
Computational · Zenodo
2026
Autopoietic Project Generation
Source
Computational · Zenodo
2026
template_pitch_deck: Reproducible, Validated Pitch-Deck Generation
Source
Computational · Zenodo
2026
Reproducible Literature Synthesis with infrastructure/search and infrastructure/reference
Source
Computational · Zenodo
2026
Registered Report Template: Preregistration, Deviations, and Claim Boundaries
Source
Computational · Zenodo
2026
Redacted Report Template: Disclosure Control and Release Audit
Source
Computational · Zenodo
2026
Pools, Rules, and Tools: A Template-Integrated Resource Architecture
Source
Active Inference · Zenodo
2026
Illegal States, Mostly Unrepresentable
Source
Entomology · Zenodo
2026
Data Descriptor Template: Schema, Provenance, and Release Readiness
Source
Active Inference · Zenodo
2026
Prior Cognitive Art
Source
Active Inference · Zenodo
2026
Active FractalRabbit: A Synthetic Benchmark for Belief Filtering Under Sparse Waypoint Observations
Source
Cognitive Security · Zenodo
2026
Fourfold Vision: William Blake, Buckminster Fuller, and the Geometry of Omnirational Seeing
Source
Art & Synergetics · Zenodo
2026
DuckRabbit: Typed Multimodal Illusion Generator
Source
Computational · Zenodo
2026
SynthOBS & FractiSynth: A Golden-Ratio OBS Broadcast Console and Native Transducer
Source
Computational · Zenodo
2026
Active Inference Power Suite: Conditional Statistical Power under Controlled Generative Settings
Source
Active Inference · Zenodo
2026
The Witness Register: Co-Registration Without Aggregation
Source
Computational · Zenodo
2026
The Line Set: Holding Instruments Apart
Source
Computational · Zenodo
2026
White Line: A Typed Ledger for the Edge of the Claim
Source
Computational · Zenodo
2026
Personal Red Lines for Development
Source
Cognitive Security · Zenodo
2026
Golden Line: Toward What Matters
Source
Computational · Zenodo
2026
Black Line: Strong Work in Public
Source
Cognitive Security · Zenodo
2026
Codomyrmex: An Artificial Ecology for Agentic Software Development
Source
Computational · Zenodo
2026
THALIA: Typed Harness with Analytical Lexical-Integrated Architecture
Source
Computational · Zenodo
2026
PROJECT BOND — The Special-Agent Operations Compendium
Source
Computational · Zenodo
2026
DigiPPPiP: Digital Partner Pen Play in Parallel
Source
Cognitive Security · Zenodo
2026
Robust Belief Sharing in Federated Active Inference: A Recovery-Tested Generalized-Variational Framework for Categorical Contamination-Aware Consensus
Source
Active Inference · Zenodo
2026
Active Skillference: A Validated Prerequisite Graph, Computational Claim Registry, and SkillTree Delivery Contract
Source
Active Inference · Zenodo
2026
docxplus — the Intelligent Document Container
Source
Computational · Zenodo
2026
Cognitive Integrity Framework: Computational Validation and Empirical Analysis (Part 2 of 3: Implementation, Empirical Analysis, and Adversarial Evaluation)
Source
Cognitive Security · Zenodo
2026
Cognitive Integrity Framework: Practical Applications and Deployment Guide (Part 3: Practitioner Guidance and Cross-Domain CIF-AD-OODA Applications)
Source
Cognitive Security · Zenodo
2026
Source
2026
Skillarum: Conditionally Reproducible Website-to-Agent-Skill Compilation
Source
Computational · Zenodo
2026
FractiSkills: One Portable Agent Skill per Page
Source
Computational · Zenodo
2026
Agentic Security and Operating Systems: A Deep Review and Prospectus of OpSec, Cognitive Security, and Agentic Cyber Security
Source
Computational · Zenodo
2025
5th Applied Active Inference Symposium — Abstract Book
Source
Media & Teaching · Presentation
2025
Adaptive Basic Income (AuBI): Integrating AI, Decentralized Infrastructure, and Active Inference
Source
Computational · Zenodo
2025
CEREBRUM: Case-Enabled Reasoning Engine with Bayesian Representations for Unified Modeling
Source
Active Inference · Zenodo
2025
Computational Complexity and Energetics of the Ant Stack
Source
Entomology · Zenodo
2025
EvoJump: Stochastic Modeling of Evolutionary Ontogenetic Trajectories
Source
Active Inference · Zenodo
2025
Increasing the Accessibility and Applicability of Active Inference
Source
Active Inference · Zenodo
2025
MDKV: A Multitrack Markdown Container for Structured, Portable Documents
Source
Computational · Zenodo
2025
Markdown Decision Process: A Framework for Probabilistic Document Analysis
Source
Computational · Zenodo
2025
On Cognitive Art & Science: Toward Wholeness From Both Sides
Source
Art & Synergetics · Zenodo
2025
On Time
Source
Art & Synergetics · Zenodo
2025
QuadMath: An Analytical Review of 4D and Quadray Coordinates
Source
Art & Synergetics · Zenodo
2025
ResNei: Solution Design Document
Source
Computational · Zenodo
2025
Symergetics: Symbolic Synergetics for Rational Arithmetic
Source
Art & Synergetics · Zenodo
2025
Synthesis of Agent and Niche
Source
Art & Synergetics · Zenodo
2025
Systems Processes, Active Inference, and Beyond
Source
Media & Teaching · Presentation
2025
Temporal Depth in a Coherent Self and in Depersonalization
Source
Active Inference · Frontiers in Psychology
2025
The Active Inference Institute & Active Inference Ecosystem (v3, 2025 snapshot)
Source
AII Ecosystem · Zenodo
2025
The Ant Stack
Source
Entomology · Zenodo
2025
The Discovery Engine: AI-Driven Synthesis and Navigation of Scientific Knowledge Landscapes
Source
Computational · ArXiv
2025
Thoughtseeds: A Hierarchical and Agentic Framework for Investigating Thought Dynamics in Meditative States
Source
Active Inference · Entropy
2025
Towards a Science of Consciousness and Social Complexity... For Ants
Source
Entomology · Book Chapter
2025
Biofirm Development with First Principles First and the Active Inference Institute at the Applied Active Inference Symposium 2024
Source
Active Inference · Zenodo
2025
Con-cat-enate: emulation of Cat Hippocampus
Source
Genetics & Biomedical · Zenodo
2025
Graphspeak: of language and handshake
Source
Active Inference · Zenodo
2025
BevCyc - posit on primitive drivers of creatures
Source
Genetics & Biomedical · Zenodo
2025
Beacons - pre emulation of social cortex
Source
Genetics & Biomedical · Zenodo
2025
Con-cat-enate: pilot overview
Source
Genetics & Biomedical · Zenodo
2024
Aligning Active Inference Ontology to SUMO
Source
AII Ecosystem · Zenodo
2024
BioFirm Development at Applied Active Inference Symposium 2024
Source
Media & Teaching · Presentation
2024
Bridging gaps in image meme research: A multidisciplinary paradigm
Source
Cognitive Security · JASIST
2024
Chemical and transcriptomic diversity do not correlate with ascending levels of social complexity in Blattodea
Source
Entomology · Ecology & Evolution
2024
Comments on National Digital Twins R&D Strategic Plan
Source
Cognitive Security · Zenodo
2024
Enhancing Population-based Search with Active Inference
Source
Active Inference · ArXiv
2024
FarmWorks: Decentralized AI Agents for Personalized Solutions
Source
Cognitive Security · Zenodo
2024
Federated inference and belief sharing
Source
Active Inference · Neuroscience & Biobehavioral Reviews
2024
Four-fold Fields of Quantum Dreams
Source
Art & Synergetics · Zenodo
2024
MathArt Stream #8: William Blake and Active Inference
Source
Media & Teaching · Presentation
2024
Sensemaking Federation: Exploring the Frontiers of Digital Innovation
Source
Media & Teaching · Presentation
2024
Shared Protentions in Multi-Agent Active Inference
Source
Active Inference · Entropy
2024
The Active Inference Institute & Active Inference Ecosystem (v2, 2024 snapshot)
Source
AII Ecosystem · Zenodo
2024
Way Finding in the Infinite Imaginarium
Source
Art & Synergetics · Zenodo
2024
Why Paleolithic Rockstars were both enigmatic and sporadic
Source
Genetics & Biomedical · Physics of Life Reviews
2024
Writing on Curio Cards for the "On NFT" book
Source
Art & Synergetics · Taschen
2024
Push and Pull: A priming sequence
Source
Active Inference · Zenodo
2024
From Neuronal Packets to Thoughtseeds: A Hierarchical Model of Embodied Cognition in the Global Workspace
Source
Active Inference · arXiv
2024
Comments Submitted by BlockScience, UW APL IRSIRI, and the Cognitive Security and Education Forum
Source
Cognitive Security · Zenodo
2023
A guided tour through the spaces of particular "minds"
Source
Active Inference · Physics of Life Reviews
2023
A single-pheromone model accounts for empirical patterns of ant colony foraging
Source
Entomology · Cognitive Systems Research
2023
A snapshot and pipeline for tissue-specific gene expression meta-analysis in honey bees
Source
Entomology · Zenodo
2023
A variational synthesis of evolutionary and developmental dynamics
Source
Active Inference · Entropy
2023
An Account of Active Inference Modeling
Source
Active Inference · Zenodo
2023
Cognitive Sovereignty & Active Inference in the State of Exception
Source
Cognitive Security · Zenodo
2023
Comments on AI Accountability Policy to NTIA
Source
Cognitive Security · NTIA
2023
Distributed Science — The Scientific Process as Multi-Scale Active Inference
Source
Active Inference · OSF
2023
Enhanced NSF Postdoctoral Reporting via Synthetic Intelligence Language Processing
Source
Computational · Zenodo
2023
Experimental Entomology in the Age of Video
Source
Entomology · JoVE
2023
Generalized Notation Notation for Active Inference Models
Source
Active Inference · Zenodo
2023
Generative Research Teams: Active Inference Compositions for Research and Meta-Science
Source
Active Inference · Zenodo
2023
Of Ants & Aging
Source
Media & Teaching · Presentation
2023
Open Access science needs Open Science Sensemaking (OSSm)
Source
Cognitive Security · MetaArXiv
2023
Postdoc review (2020–2023)
Source
Media & Teaching · Presentation
2023
The Active Inference Institute and Active Inference Ecosystem (v1)
Source
AII Ecosystem · Zenodo
2023
The P3IF: Properties, Processes, and Perspectives Inter-Framework
Source
Cognitive Security · Zenodo
2023
To comment or not to comment
Source
Genetics & Biomedical · Physics of Life Reviews
2023
Transcript of Chris Fields, "Physics as Information Processing" course
Source
Media & Teaching · Zenodo
2023
William Blake & Buckminster Fuller: Lives in Juxtaposition
Source
Art & Synergetics · Zenodo
2023
A Natural AI Based on The Science of Computational Physics, Biology and Neuroscience: Policy and Societal Significance
Source
Computational · Zenodo
2023
ATLAS: A Question Oriented Approach to the Use of Pattern Languages in Knowledge Management
Source
Cognitive Security · Zenodo
2023
Transcript of Active Inference GuestStream 049.1: "Clickbait, consciousness science, and responsible journalism"
Source
Active Inference · Zenodo
2023
Modern Nostr Index Card-based Knowledge Engineering
Source
Active Inference · Zenodo
2023
Slides for Iris
Source
Active Inference · Zenodo
2022
An Active Inference Ontology for Decentralized Science
Source
Active Inference · Zenodo
2022
Catechism for Towards Active Diffusion
Source
AII Ecosystem · Zenodo
2022
From Users to (Sense)Makers: Stigmergic Social Annotation
Source
Cognitive Security · Hypertext '22
2022
On free will or the lack thereof (interview with Robert Sapolsky)
Source
Genetics & Biomedical · ALIUS Bulletin
2022
Predictive Processing Interpretation of the Mirror Test
Source
Art & Synergetics · Zenodo
2022
Structuring the Information Commons: Open Standards and Cognitive Security
Source
Cognitive Security · COGSEC.org
2022
Systems Modeling and Cognitive Audits for Hypercert Ecosystems
Source
Cognitive Security · Zenodo
2022
The Free Energy Principle & Active Inference: a Systematic Literature Analysis
Source
Active Inference · Zenodo
2022
TrustFinder: Recommendations for Community-Based Trust Systems
Source
Cognitive Security · Zenodo
2022
Canonical neural networks perform active inference
Source
Active Inference · Zenodo
2022
Interoception as modeling, allostasis as control
Source
Active Inference · Zenodo
2022
Transcript of: Mark Solms, "Consciousness as Precision Optimization: Some Physiological and Philosophical Considerations", ActInf GuestStream #016
Source
Active Inference · Zenodo
2022
A Worked Example of the Bayesian Mechanics of Classical Objects
Source
Active Inference · Zenodo
2022
Transcript of discussions on: "Communication as Socially Extended Active Inference: An Ecological Approach to Communicative Behavior"
Source
Active Inference · Zenodo
2022
Tracking Public Sensemaking through Rhetorical Annotation of Image Memes
Source
Cognitive Security · Zenodo
2022
Active Blockference: cadCAD with Active Inference for Cognitive Systems Modeling
Source
Active Inference · International Workshop on Active Inference
2021
Active Inferants: An Active Inference Framework for Ant Colony Behavior
Source
Entomology · Frontiers in Behavioral Neuroscience
2021
Active Inference in Modeling Conflict
Source
Active Inference · Zenodo
2021
Digital Rhetorical Ecosystem Analysis: Sensemaking of Digital Memetic Discourse
Source
Cognitive Security · Zenodo
2021
Innovator's Digital Playbook
Source
Media & Teaching · Web
2021
Narrative Information Ecosystems: Conflict and Trust on the Endless Frontier
Source
Cognitive Security · COGSEC.org
2021
Narrative Information Management
Source
Cognitive Security · Zenodo
2021
The Facilitator's Catechism Playbook
Source
Media & Teaching · Zenodo
2021
Transcript of: Karl Friston, 1st Applied Active Inference Symposium, Active Inference Lab, June 21, 2021
Source
Active Inference · Zenodo
2021
Collaborative Writing for Catechism-Based Teams
Source
Cognitive Security · Zenodo
2021
Disinforge
Source
Cognitive Security · Science
2021
Defining events: 2020 in hindsight
Source
Cognitive Security · Science
2021
Knowledge Management Archipelago
Source
Cognitive Security · Zenodo
2020
Active Inference & Behavior Engineering for Teams
Source
Active Inference · Zenodo
2020
Communication for Remote Teams
Source
Media & Teaching · Udemy
2020
Distributed physiology and the molecular basis of social life in eusocial insects
Source
Entomology · Hormones & Behavior
2020
Emergent Teams for Complex Threats
Source
Cognitive Security · Zenodo
2020
Gene expression variation in the brains of harvester ant foragers is associated with collective behavior
Source
Entomology · Communications Biology
2020
How to use Keybase for remote teams
Source
Media & Teaching · Udemy
2020
Measurement of natural variation of neurotransmitter tissue content in red harvester ant brains
Source
Entomology · Analytical & Bioanalytical Chemistry
2020
The Great Preset: Remote Teams and Operational Art
Source
Cognitive Security · COGSEC.org
2020
The Innovator's Catechism
Source
Cognitive Security · Zenodo
2020
The neuroscience of decision making (interview with Timothy Hanks)
Source
Genetics & Biomedical · ALIUS Bulletin
2020
The Facilitator's Catechism
Source
Cognitive Security · Zenodo
2020
Reimagining Maps
Source
Cognitive Security · Zenodo
2020
Infinite Games for Infinite Teams
Source
Cognitive Security · Zenodo
2019
Dennett Explained (interview with Daniel Dennett)
Source
Genetics & Biomedical · ALIUS Bulletin
2019
PhD: Behavioral, Physiological, and Transcriptomic Variation Among Colonies of Pogonomyrmex barbatus
Source
Entomology · Stanford University
2019
The ant colony as a test for scientific theories of consciousness
Source
Entomology · Synthese
2019
The physiology of forager hydration and variation among harvester ant colonies
Source
Entomology · Scientific Reports
2018
Foraging behavior and locomotion of the invasive Argentine ant from winter aggregations
Source
Entomology · PLoS One
2018
MVEE: A Framework for Evolutionary Studies
Source
Media & Teaching · Presentation
2018
Of woodlice and men: A Bayesian account of cognition, life and consciousness (with Karl Friston)
Source
Active Inference · ALIUS Bulletin
2018
Partner Pen Play in Parallel (PPPiP): A New Paradigm for Relationship Improvement
Source
Art & Synergetics · Arts
2018
The Role of Dopamine in Collective Regulation of Foraging in Harvester Ants
Source
Entomology · iScience
2017
The MutAnts are here
Source
Entomology · Cell
2017
Two lineages that need each other
Source
Entomology · Molecular Ecology
2017
Osteopathy and the Variable Variability of Health
Source
Genetics & Biomedical · The Cranial Letter 70(4)
2016
Ant Genetics: Reproductive Physiology, Worker Morphology, and Behavior
Source
Entomology · Annual Review of Neuroscience
2016
Context-dependent expression of the foraging gene in field colonies of ants
Source
Entomology · Proceedings of the Royal Society B
2016
Influence of Nuclear Structure on formation of radiation-induced lethal lesions
Source
Genetics & Biomedical · Int. J. Radiation Biology
2016
Lessons from the colony
Source
Entomology · Science
2016
Full speed ahead to the City on the Hill
Source
AII Ecosystem · Science
2016
Cells, Mechanobiology, and Osteopathy
Source
Genetics & Biomedical · The Cranial Letter 69(1)
2015
Commentary: Portuguese crypto-Jews: the genetic heritage of a complex history
Source
Genetics & Biomedical · Frontiers in Genetics
2015
Could Ehrlichial Infection Cause Some Changes Associated with Leukemia?
Source
Genetics & Biomedical · Medical Hypotheses
2015
Large Scale Coding Sequence Change Underlies the Evolution of Post-developmental Novelty in Honey Bees
Source
Genetics & Biomedical · Molecular Biology & Evolution