Publications

220 works spanning Active Inference, computational entomology, cognitive security, art & synergetics, genetics, and open science β€” as of September 2026

Read as one longitudinal record, these versioned deposits preserve beliefs held, positions updated, and wrong turns along the way β€” the trajectory is the asset, not the snapshot.

Scholar metrics are dated in the verification layer Google Scholar ORCID 0000-0001-6232-9096 ResearchGate

Research Routes and Topic Clusters

Start with a domain page when you want context, or use the searchable table for exact works, DOIs, and paper folders.

FEP

Active Inference & Free Energy Principle

Generative models, belief sharing, GNN, CEREBRUM, FEP formalization, and learning infrastructure.

Domain page
ENT

Entomology & Social Insects

Ant colony cognition, foraging, physiology, transcriptomics, and computational collective behavior.

Domain page
SEC

Cognitive Security

Narrative ecosystems, P3IF, information commons, ATLAS, cognitive integrity, and digital rhetoric.

Domain page
COM

Computational Methods

Reproducible research templates, MDKV, discovery engines, software catalogs, and agent-ready documents.

Domain page
BIO

Genetics & Biomedicine

Gene expression, honey bee evolution, nuclear structure, population genetics, and biology education.

Domain page
DOI

Canonical Work Pages

Per-work landing pages with citations, abstracts, source links, related works, and verification context.

Works index

Citation and verification guide Search Active Inference

Search the Complete Bibliography

Filter by title, venue, year, domain, type, DOI, and paper-folder availability.

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12026ComputationalPaperA template/ approach to Reproducible Generative Research: Architecture and Ergonomics from Configuration through PublicationZenodoβ†’ Link Docs FT πŸ–Ό
22026MediaSeriesActive Inference Journal β€” 500+ videos on Active Inference with transcriptsYouTubeβ€”
32026Art & SynergeticsPaperBefore Pragmatism Had a Name: Blake's "America A Prophecy" Anticipates American Anticipatory EpistemologyZenodoβ†’ Link Docs FT πŸ–Ό
42026Art & SynergeticsPaperThe Golden Compass and the Lunar Flux: William Blake, Bimetallic Meta-stability, and the Architecture of ValueZenodoβ†’ Link Docs FT πŸ–Ό
52026Cognitive SecurityPaperCognitive Integrity Framework: Formal Foundations for Multiagent Security (Part 1: Theory)Zenodo→ Link Docs FT
62026MediaSeriesPersonal YouTube β€” 200+ livestreams: drawings, Synergetics, paper discussionsYouTubeβ€”
72026Art & SynergeticsPaperThe Doors of Perception are the Threshold of Prediction: Active Inference and William Blake's Theory of SeeingZenodoβ†’ Link Docs FT πŸ–Ό
82025MediaPresentation5th Applied Active Inference Symposium β€” Abstract BookPresentationβ†’ Link Docs FT πŸ–Ό
92025ComputationalPaperAdaptive Basic Income (AuBI): Integrating AI, Decentralized Infrastructure, and Active InferenceZenodoβ†’ Link Docs FT πŸ–Ό
102025Active InferencePaperCEREBRUM: Case-Enabled Reasoning Engine with Bayesian Representations for Unified ModelingZenodoβ†’ Link Docs FT πŸ–Ό
112025EntomologyPaperComputational Complexity and Energetics of the Ant StackZenodoβ†’ Link Docs FT πŸ–Ό
122025Active InferencePaperEvoJump: Stochastic Modeling of Evolutionary Ontogenetic TrajectoriesZenodoβ†’ Link Docs FT πŸ–Ό
132025Active InferencePaperIncreasing the Accessibility and Applicability of Active InferenceZenodo→ Link Docs FT
142025ComputationalPaperMDKV: A Multitrack Markdown Container for Structured, Portable DocumentsZenodo→ Link Docs FT
152025ComputationalPaperMarkdown Decision Process: A Framework for Probabilistic Document AnalysisZenodo→ Link Docs FT
162025Art & SynergeticsPaperOn Cognitive Art & Science: Toward Wholeness From Both SidesZenodoβ†’ Link Docs FT πŸ–Ό
172025Art & SynergeticsPaperOn TimeZenodo→ Link Docs FT
182025Art & SynergeticsPaperQuadMath: An Analytical Review of 4D and Quadray CoordinatesZenodoβ†’ Link Docs FT πŸ–Ό
192025ComputationalPaperResNei: Solution Design DocumentZenodoβ†’ Link Docs FT πŸ–Ό
202025Art & SynergeticsPaperSymergetics: Symbolic Synergetics for Rational ArithmeticZenodoβ†’ Link Docs FT πŸ–Ό
212025Art & SynergeticsPaperSynthesis of Agent and NicheZenodo→ Link Docs FT
222025MediaPresentationSystems Processes, Active Inference, and BeyondPresentationβ†’ Link Docs FT πŸ–Ό
232025Active InferencePaperTemporal Depth in a Coherent Self and in DepersonalizationFrontiers in Psychologyβ†’ Link Docs FT πŸ–Ό
242025AII EcosystemPaperThe Active Inference Institute & Active Inference Ecosystem (v3, 2025 snapshot)Zenodoβ†’ Link Docs FT πŸ–Ό
252025EntomologyPaperThe Ant StackZenodoβ†’ Link Docs FT πŸ–Ό
262025ComputationalPaperThe Discovery Engine: AI-Driven Synthesis and Navigation of Scientific Knowledge LandscapesArXivβ†’ Link Docs FT πŸ–Ό
272025Active InferencePaperThoughtseeds: A Hierarchical and Agentic Framework for Investigating Thought Dynamics in Meditative StatesEntropyβ†’ Link Docs FT πŸ–Ό
282025EntomologyPaperTowards a Science of Consciousness and Social Complexity... For AntsBook Chapterβ€” Docs FT πŸ–Ό
292024AII EcosystemPaperAligning Active Inference Ontology to SUMOZenodo→ Link Docs FT
302024MediaPresentationBioFirm Development at Applied Active Inference Symposium 2024Presentationβ†’ Link Docs FT πŸ–Ό
312024Cognitive SecurityPaperBridging gaps in image meme research: A multidisciplinary paradigmJASISTβ†’ Link Docs FT πŸ–Ό
322024EntomologyPaperChemical and transcriptomic diversity do not correlate with ascending levels of social complexity in BlattodeaEcology & Evolutionβ†’ Link Docs FT πŸ–Ό
332024Cognitive SecurityPaperComments on National Digital Twins R&D Strategic PlanZenodoβ†’ Link Docs FT πŸ–Ό
342024Active InferencePaperEnhancing Population-based Search with Active InferenceArXivβ†’ Link Docs FT πŸ–Ό
352024Cognitive SecurityPaperFarmWorks: Decentralized AI Agents for Personalized SolutionsZenodoβ†’ Link Docs FT πŸ–Ό
362024Active InferencePaperFederated inference and belief sharingNeuroscience & Biobehavioral Reviewsβ†’ Link Docs FT πŸ–Ό
372024Art & SynergeticsPaperFour-fold Fields of Quantum DreamsZenodoβ†’ Link Docs FT πŸ–Ό
382024MediaPresentationMathArt Stream #8: William Blake and Active InferencePresentationβ†’ Link Docs FT πŸ–Ό
392024MediaPresentationSensemaking Federation: Exploring the Frontiers of Digital InnovationPresentation→ Link Docs FT
402024Active InferencePaperShared Protentions in Multi-Agent Active InferenceEntropyβ†’ Link Docs FT πŸ–Ό
412024AII EcosystemPaperThe Active Inference Institute & Active Inference Ecosystem (v2, 2024 snapshot)Zenodoβ†’ Link Docs FT πŸ–Ό
422024Art & SynergeticsPaperWay Finding in the Infinite ImaginariumZenodo→ Link Docs FT
432024GeneticsPaperWhy Paleolithic Rockstars were both enigmatic and sporadicPhysics of Life Reviews→ Link Docs
442024Art & SynergeticsPaperWriting on Curio Cards for the "On NFT" bookTaschenβ€” Docs FT πŸ–Ό
452023Active InferencePaperA guided tour through the spaces of particular "minds"Physics of Life Reviewsβ†’ Link Docs FT πŸ–Ό
462023EntomologyPaperA single-pheromone model accounts for empirical patterns of ant colony foragingCognitive Systems Researchβ†’ Link Docs FT πŸ–Ό
472023EntomologyPaperA snapshot and pipeline for tissue-specific gene expression meta-analysis in honey beesZenodoβ†’ Link Docs FT πŸ–Ό
482023Active InferencePaperA variational synthesis of evolutionary and developmental dynamicsEntropyβ†’ Link Docs FT πŸ–Ό
502023Active InferencePaperAn Account of Active Inference ModelingZenodo→ Link Docs FT
512023Cognitive SecurityPaperCognitive Sovereignty & Active Inference in the State of ExceptionZenodo→ Link Docs FT