Publications

226 works spanning Active Inference, computational entomology, cognitive security, art & synergetics, genetics, and open science — as of October 2026

Read as one longitudinal record, these versioned deposits preserve beliefs held, positions updated, and wrong turns along the way — the trajectory is the asset, not the snapshot.

Scholar metrics are dated in the verification layer Google Scholar ORCID 0000-0001-6232-9096 ResearchGate

William Blake publication pathway: core works, related citations and quotations, and DOI version records

Research Routes and Topic Clusters

Start with a domain page when you want context, or use the searchable table for exact works, DOIs, and paper folders.

FEP

Active Inference & Free Energy Principle

Generative models, belief sharing, GNN, CEREBRUM, FEP formalization, and learning infrastructure.

Domain page
ENT

Entomology & Social Insects

Ant colony cognition, foraging, physiology, transcriptomics, and computational collective behavior.

Domain page
SEC

Cognitive Security

Narrative ecosystems, P3IF, information commons, ATLAS, cognitive integrity, and digital rhetoric.

Domain page
COM

Computational Methods

Reproducible research templates, MDKV, discovery engines, software catalogs, and agent-ready documents.

Domain page
BIO

Genetics & Biomedicine

Gene expression, honey bee evolution, nuclear structure, population genetics, and biology education.

Domain page
DOI

Canonical Work Pages

Per-work landing pages with citations, abstracts, source links, related works, and verification context.

Works index

Citation and verification guide Search Active Inference

Search the Complete Bibliography

Filter by title, venue, year, domain, type, DOI, and paper-folder availability.

Click column headers to sort. Use the search box to filter by any substring (including DOI fragments).
12026ComputationalPaperA template/ approach to Reproducible Generative Research: Architecture and Ergonomics from Configuration through PublicationZenodo→ Link Docs FT 🖼
22026MediaSeriesActive Inference Journal — 500+ videos on Active Inference with transcriptsYouTube—
32026Art & SynergeticsPaperBefore Pragmatism Had a Name: Blake's "America A Prophecy" Anticipates American Anticipatory EpistemologyZenodo→ Link Docs FT 🖼
42026Art & SynergeticsPaperThe Golden Compass and the Lunar Flux: William Blake, Bimetallic Meta-stability, and the Architecture of ValueZenodo→ Link Docs FT 🖼
52026Cognitive SecurityPaperCognitive Integrity Framework: Formal Foundations (Part 1 of 3: Theoretical Foundations)Zenodo→ Link Docs FT
62026MediaSeriesPersonal YouTube — 200+ livestreams: drawings, Synergetics, paper discussionsYouTube—
72026Art & SynergeticsPaperThe Doors of Perception are the Threshold of Prediction: Active Inference and William Blake's Theory of SeeingZenodo→ Link Docs FT 🖼
82025MediaPresentationAbstract book for: 5th Applied Active Inference SymposiumPresentation→ Link Docs FT 🖼
92025ComputationalPaperAdaptive Basic Income (AuBI): Integrating AI, Decentralized Infrastructure, and Active Inference for Next-Generation Economic SystemsZenodo→ Link Docs FT 🖼
102025Active InferencePaperCEREBRUM: Case-Enabled Reasoning Engine with Bayesian Representations for Unified ModelingZenodo→ Link Docs FT 🖼
112025EntomologyPaperComputational Complexity and Energetics of the Ant StackZenodo→ Link Docs FT 🖼
122025Active InferencePaperEvoJump: A Unified Framework for Stochastic Modeling of Evolutionary Ontogenetic TrajectoriesZenodo→ Link Docs FT 🖼
132025Active InferencePaperIncreasing the Accessibility and Applicability of Active Inference: Generative Playbooks and Open-Source Summer School Curriculum DevelopmentZenodo→ Link Docs FT
142025ComputationalPaperMDKV: A Multitrack Markdown Container for Structured, Portable DocumentsZenodo→ Link Docs FT
152025ComputationalPaperMarkdown Decision Process: A Framework for Probabilistic Document Analysis and OptimizationZenodo→ Link Docs FT
162025Art & SynergeticsPaperOn Cognitive Art & Science: Toward Wholeness From Both SidesZenodo→ Link Docs FT 🖼
172025Art & SynergeticsPaperOn TimeZenodo→ Link Docs FT
182025Art & SynergeticsPaperQuadMath: An Analytical Review of 4D and Quadray CoordinatesZenodo→ Link Docs FT 🖼
192025ComputationalPaperResNei: Solution Design DocumentZenodo→ Link Docs FT 🖼
202025Art & SynergeticsPaperSymergetics: Symbolic Synergetics for Rational Arithmetic, Geometric Pattern Discovery, and All-Integer AccountingZenodo→ Link Docs FT 🖼
212025Art & SynergeticsPaperSynthesis of Agent and NicheZenodo→ Link Docs FT
222025MediaPresentationSystems Processes, Active Inference, and BeyondPresentation→ Link Docs FT 🖼
232025Active InferencePaperTemporal depth in a coherent self and in depersonalization: theoretical modelFrontiers in Psychology→ Link Docs FT 🖼
242025AII EcosystemPaperThe Active Inference Institute & Active Inference EcosystemZenodo→ Link Docs FT 🖼
252025EntomologyPaperThe Ant StackZenodo→ Link Docs FT 🖼
262025ComputationalPaperThe Discovery Engine: A Framework for AI-Driven Synthesis and Navigation of Scientific Knowledge LandscapesArXiv→ Link Docs FT 🖼
272025Active InferencePaperThoughtseeds: A Hierarchical and Agentic Framework for Investigating Thought Dynamics in Meditative StatesEntropy→ Link Docs FT 🖼
282025EntomologyPaperTowards a Science of Consciousness and Social Complexity... For AntsBook Chapter— Docs FT 🖼
292024AII EcosystemPaperAligning Active Inference Ontology to SUMOZenodo→ Link Docs FT
312024Cognitive SecurityPaperBridging gaps in image meme research: A multidisciplinary paradigm for scaling up qualitative analysesJASIST→ Link Docs FT 🖼
322024EntomologyPaperChemical and transcriptomic diversity do not correlate with ascending levels of social complexity in the insect order BlattodeaEcology & Evolution→ Link Docs FT 🖼
332024Cognitive SecurityPaperComments Submitted by BlockScience, University of Washington APL Information Risk and Synthetic Intelligence Research Initiative (IRSIRI), Cognitive Security and Education Forum (COGSEC), and the Active Inference Institute (AII) to the Networking and Information Technology Research and Development National Coordination Office's Request for Comment on The Creation of a National Digital Twins R&D Strategic Plan NITRD-2024-13379Zenodo→ Link Docs FT 🖼
342024Active InferencePaperEnhancing Population-based Search with Active InferenceArXiv→ Link Docs FT 🖼
352024Cognitive SecurityPaperFarmWorks: Decentralized AI Agents for Personalized SolutionsZenodo→ Link Docs FT 🖼
362024Active InferencePaperFederated inference and belief sharingNeuroscience & Biobehavioral Reviews→ Link Docs FT 🖼
372024Art & SynergeticsPaperFour-fold Fields of Quantum DreamsZenodo→ Link Docs FT 🖼
382024MediaPresentationMathArt Stream #8 ~ William Blake and Active InferencePresentation→ Link Docs FT 🖼
392024MediaPresentationTranscript of: "Sensemaking Federation: Exploring the Frontiers of Digital Innovation"Presentation→ Link Docs FT
402024Active InferencePaperShared Protentions in Multi-Agent Active InferenceEntropy→ Link Docs FT 🖼
412024AII EcosystemPaperThe Active Inference Institute & Active Inference EcosystemZenodo→ Link Docs FT 🖼
422024Art & SynergeticsPaperWay Finding in the Infinite Imaginarium: Juxtaposing Epistemic Tempos and ModesZenodo→ Link Docs FT
432024GeneticsPaperWhy Paleolithic Rockstars were both enigmatic and sporadic: A comment on: ‘Snakes and Ladders’ in paleoanthropology: From cognitive surprise to skillfulness a million years agoPhysics of Life Reviews→ Link Docs
442024Art & SynergeticsPaperWriting on Curio Cards for the "On NFT" bookTaschen— Docs FT 🖼
452023Active InferencePaperA guided tour through the spaces of particular “minds”: A Comment on “Path integrals, particular kinds, and strange things”Physics of Life Reviews→ Link Docs FT 🖼
462023EntomologyPaperA single-pheromone model accounts for empirical patterns of ant colony foraging previously modeled using two pheromonesCognitive Systems Research→ Link Docs FT 🖼
472023EntomologyPaperA snapshot and pipeline for tissue-specific gene expression meta-analysis in honey bees (Apis mellifera)Zenodo→ Link Docs FT 🖼
482023Active InferencePaperA variational synthesis of evolutionary and developmental dynamicsEntropy→ Link Docs FT 🖼
502023Active InferencePaperAn Account of Active Inference ModelingZenodo→ Link Docs FT
512023Cognitive SecurityPaperCognitive Sovereignty & Active Inference in the State of ExceptionZenodo→ Link Docs FT
522023Cognitive SecurityPaperComments on AI Accountability Policy Submitted to NTIA Docket 2023-0005-0001 by IRSIRI, AII, PFH, and COGSECNTIA→ Link Docs FT 🖼