Primary GitHub Repository Inventory

Searchable non-fork software map for Daniel Ari Friedman, docxology, and Active Inference Institute repositories.

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Primary Repository Coverage

Generated from the GitHub REST API and cross-marked against the curated software catalog; forks are listed separately.

154Primary repos
115docxology
39AII
139Curated in software catalog
154Public visibility
0Private visibility
87Forks archived separately
0Archived
115Updated in 90 days

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Filter primary repositories by owner, curation status, language, recency, and text across names, topics, and descriptions.

RepositoryLanguageStarsForksUpdatedFlags
ActiveInferenceInstitute/act_inf_metaanalysisA computational meta-analysis of the Active Inference literature. An automated LLM pipeline extracts assertions from 849 papers across theory, tools, and domains, structuring them as nanopublications. By mapping these into a citation-weighted knowledge graph, this project provides a reproducible, living review of hypothesis-level consensus. HTML 6 1 2026-08-03 curated, recent
ActiveInferenceInstitute/ActInf_RxInferActive Inference and RxInfer.jl Julia 2 2 2026-08-03 curated, recent
ActiveInferenceInstitute/active_fractal_rabbitActive Inference for FractalRabbit Python 0 0 2026-07-13 curated, recent
ActiveInferenceInstitute/Active_Inference_Ontology HTML 16 1 2026-08-02 curated, recent
ActiveInferenceInstitute/active_inference_power Python 0 0 2026-07-30 recent
ActiveInferenceInstitute/Active_Inference_Un0 0 0 2026-07-17 recent
ActiveInferenceInstitute/ActiveBlockference Python 32 6 2026-08-03 curated, recent
ActiveInferenceInstitute/ActiveInferAntsActive Inference models of/for Ants Python 29 5 2026-08-03 curated, recent
ActiveInferenceInstitute/ActiveInferenceCategoryTheoryActive Inference & Category Theory 9 1 2026-08-02 curated, recent
ActiveInferenceInstitute/ActiveInferenceImplementationsFor learning and exploring Probabilistic Inference Jupyter Notebook 0 0 2026-08-03 curated, recent
ActiveInferenceInstitute/ActiveInferenceJournalContent of the Active Inference Journal HTML 42 9 2026-08-03 curated, recent
ActiveInferenceInstitute/AEOSActive Entity Ontology for Science Python 8 1 2026-08-02 curated, recent
ActiveInferenceInstitute/aii-orgActive Inference Institute organizational website. HTML 1 0 2026-08-02 recent
ActiveInferenceInstitute/ATLASATLAS Python 0 1 2026-08-03 curated, recent
ActiveInferenceInstitute/Biofirm Python 4 1 2026-08-03 curated, recent
ActiveInferenceInstitute/Bots 0 0 2022-12-31 curated
ActiveInferenceInstitute/CEREBRUMCEREBRUM: Case-Enabled Reasoning Engine with Bayesian Representations for Unified Modeling Python 13 3 2026-08-03 curated, recent
ActiveInferenceInstitute/COGANT Python 2 0 2026-08-03 curated, recent
ActiveInferenceInstitute/cognitive Python 20 4 2026-08-03 curated, recent
ActiveInferenceInstitute/coursesCourses for learning Active Inference HTML 9 2 2026-08-03 curated, recent
ActiveInferenceInstitute/fep_lean Python 2 1 2026-08-01 curated, recent
ActiveInferenceInstitute/fundamentalsUnofficial repo for materials and code related to "Fundamentals of Active Inference" (Namjoshi 2026). Python 29 5 2026-08-05 curated, recent
ActiveInferenceInstitute/Garden-of-Iris Python 0 0 2026-08-03 curated, recent
ActiveInferenceInstitute/GEN24Working/Exploring branch for GEN-24 project https://coda.io/d/Active-Blockference_dIvNESFmyj6/GEN-24_su2DYdSx#_luRI0xVN Jupyter Notebook 0 0 2026-08-02 curated, recent
ActiveInferenceInstitute/gen25 0 0 2026-08-02 curated, recent
ActiveInferenceInstitute/GeneralizedNotationNotationMethods for specifying, checking, typing, rendering, executing, analyzing, and visualizing state space models, for Active Inference and Beyond. Python 30 3 2026-08-04 curated, recent
ActiveInferenceInstitute/GEO-INFER HTML 13 3 2026-08-04 curated, recent
ActiveInferenceInstitute/institute_website HTML 5 1 2026-08-03 recent
ActiveInferenceInstitute/ISSSISSS Python 0 0 2026-08-02 curated, recent
ActiveInferenceInstitute/Journal-UtilitiesUtilities and Documentation for creating contents for the Active Inference Journal HTML 10 3 2026-08-03 curated, recent
ActiveInferenceInstitute/Knowledge-Engineering Jupyter Notebook 5 1 2026-08-03 curated, recent
ActiveInferenceInstitute/NoOrgNoOrg is a Real Org TypeScript 1 0 2026-08-02 curated, recent
ActiveInferenceInstitute/on_policy_distillationOn Policy Distillation and Active Inference Python 3 1 2026-08-03 curated, recent
ActiveInferenceInstitute/Parr_et_al_2022_ActInf_TextbookActive Inference Textbook Group Julia 6 0 2026-08-02 curated, recent
ActiveInferenceInstitute/policy_entanglementPolicy Entanglement in Active Inference v1.0.0 Python 2 0 2026-08-02 curated, recent
ActiveInferenceInstitute/pymcpPyMCP -- MCP for PyMDP Python 3 1 2026-08-02 curated, recent
ActiveInferenceInstitute/Research-Discovery-Engine HTML 6 1 2026-08-03 curated, recent
ActiveInferenceInstitute/Start Python 5 0 2026-08-03 curated, recent
ActiveInferenceInstitute/Symposium Python 12 1 2026-08-03 curated, recent
docxology/active-inference-pocket-labActive Inference Pocket Lab — portable simulation and learning environment for Active Inference experiments JavaScript 0 0 2026-04-18 curated
docxology/active_inferenceActive Inference for, with, by, Generative AI. Python 1 0 2025-11-25 curated
docxology/active_torchference Python 0 0 2025-10-04 curated
docxology/ActiveInferAntsActive InferAnts Python 3 0 2026-04-15 curated
docxology/AGEINTAGEINT — Agentic Intelligence Curriculum HTML 2 1 2026-08-03 curated, recent
docxology/AgenticMeshActive Inference & Agentic Mesh Python 1 0 2025-02-01 curated
docxology/alphacogantAlphaCOGANT: Recursive Corporate Self-Improvement as Active Inference — GNN-via-COGANT model of the AlphaFund Economic World Model Python 0 0 2026-06-27 curated, recent
docxology/ant-pheromone Python 0 0 2022-09-14 curated
docxology/ant_stack Python 0 1 2026-05-18 curated, recent
docxology/Autonomous-Drone-Navigation-in-AirSim-With-Active-Inference 0 0 2025-04-25 curated
docxology/BeeStack Python 0 1 2026-05-28 curated, recent
docxology/biol-1BIOL-1: General Biology Course Materials - College of the Redwoods HTML 0 0 2026-05-19 curated, recent
docxology/biol-8BIOL-8: Human Anatomy & Physiology Course Materials - College of the Redwoods HTML 0 0 2026-05-19 curated, recent
docxology/biology_textbook Python 1 0 2026-07-11 curated, recent
docxology/black_lineA positive operating discipline for concise, inspectable, revisable work Python 0 0 2026-08-02 curated, recent
docxology/blakeWilliam Blake Python 1 0 2026-07-05 curated, recent
docxology/blake_jiangWilliam Blake, Professor Jiang, and the Architecture of Intelligence — rapid AI-augmented scholarly response to Game Theory #24: The AI Apocalypse (12 May 2026). Triangulates Jiang's diagnosis with Blake's perceptual diagnostics and Friston's Active Inference. Python 0 0 2026-05-12 curated, recent
docxology/bondPROJECT BOND — The Special-Agent Operations Compendium Python 0 0 2026-08-07 curated, recent
docxology/cascadia Python 0 0 2025-08-26 curated
docxology/coasysUsing all coasys repos Python 0 0 2026-06-15 curated, recent
docxology/codomyrmexAI-native modular coding workspace — 127 modules, 424 MCP tools, 21K+ zero-mock tests, multi-agent orchestration (Claude/Gemini/GPT), PAI integration Python 11 2 2026-08-04 curated, recent
docxology/cognitiveCognitive science research workspace — Active Inference, Bayesian modeling, ant behavior, and computational neuroscience Python 14 0 2026-05-03 curated
docxology/cognitive-engine Python 3 0 2026-03-02 curated
docxology/cognitive_case_diagrams TeX 0 0 2026-05-25 curated, recent
docxology/CogSecSkillsMultiharness agentic tool-use skills for Cognitive Security & analytic tradecraft — 100 SAT/cogsec skills runnable under Claude Code, Codex, Hermes. Defensive, educational, accountable. Python 3 1 2026-08-04 curated, recent
docxology/cohereantsWhen do bugs see (infra)red? Computational research on insect IR sensing and olfaction modeling — engineering bounds and protocol design. Python 0 0 2026-05-29 curated, recent
docxology/course Python 0 0 2025-12-08 curated
docxology/crescent-cityComplete pipeline for the Crescent City, CA municipal code. TypeScript 2 0 2026-07-23 curated, recent
docxology/crescent-city-intelComprehensive local intelligence platform for Crescent City, CA — municipal code, real-time alerts, RAG chat, analytics, and civic intelligence domains TypeScript 0 0 2026-08-05 curated, recent
docxology/crescent_cityA comprehensive, reproducible scholarly history of Crescent City, California — Tolowa Dee-ni' habitation through the Cascadia-margin present. 46 chapters, 24 reproducible figures, Pandoc+XeLaTeX pipeline. DOI 10.5281/zenodo.20286171 Python 0 0 2026-05-19 recent
docxology/curriculumCourse materials and curriculum for biology, ecology, and Active Inference education HTML 1 0 2026-03-24 curated
docxology/democreateDemoCreate: declarative, deterministic audio-visual demo generation for software packages and research papers. Python 0 0 2026-08-04 curated, recent
docxology/Digi-PPPiPDigiPPPiP — Digital Partner Pen Play in Parallel: a composable, fully-tested computational companion (renders via the docxology/template sidecar). Deterministic conceptual models; draft metadata. TeX 1 0 2026-08-06 curated, recent
docxology/docxologyDaniel Ari Friedman, PhD public research and software index: updated with works, papers, art, media, and software repositories. HTML 1 0 2026-08-02 recent
docxology/dotscopeThe Physics Engine for AI Coding Agents. 0 0 2026-04-14 curated
docxology/DuckRabbitTyped, deterministic multimodal illusion generator — visual, auditory, temporal, and audio-visual stimuli with scholarly evidence and publication outputs Python 0 0 2026-07-17 curated, recent
docxology/ento_linguistics Python 0 0 2026-04-15 curated
docxology/entofileENTO (ENcrypted, Typed, Omnitrack): a flat-ZIP authenticated container format for multimodal research data, with per-track AES-256-GCM, graded observability, and hash-chained proofs. Reference implementation. Python 1 0 2026-08-04 curated, recent
docxology/EntoLawA source-anchored, reproducible field map of entomological law TeX 0 0 2026-07-02 curated, recent
docxology/EvoJumpA Comprehensive Framework for Evolutionary Ontogenetic Analysis Python 0 0 2025-10-01 curated
docxology/flick Python 0 0 2025-03-30 curated
docxology/FORMINDEXFORMIS analysis Rich Text Format 2 0 2026-07-31 curated, recent
docxology/fuller-obsidian 0 0 2025-02-26 curated
docxology/godel_ivm Python 0 0 2025-10-14 curated
docxology/goference Go 0 0 2025-09-22 curated
docxology/golden_lineAn aspirational thread and long-horizon direction for personal work Python 0 0 2026-08-02 curated, recent
docxology/grateful_dataThe Music Never Stopped — a citation-bound Grateful Dead data compendium (shows, songs, performances, venues, personnel, recordings, reception) with a category-theoretic interpretation. Python 0 0 2026-06-01 curated, recent
docxology/GrowthModel 0 0 2020-06-04 uncataloged
docxology/hhs-opendataAnalysis of HHS data Python 0 0 2026-02-14 curated
docxology/identity 0 0 2019-02-15 uncataloged
docxology/infra-calc JavaScript 0 0 2025-05-06 curated
docxology/institute_websitePublic GitHub Pages website for Active Inference Institute information HTML 0 0 2026-06-08 recent
docxology/itraceVerification-first webcam eye-movement analysis (gaze, saccades, pupillometry) — MIT-licensed Python core, algorithmically verified. Zenodo DOI 10.5281/zenodo.20614908 Python 1 1 2026-06-09 curated, recent
docxology/ivm-xyzpackage for working with 3D and 4D geometries. Python 1 1 2026-07-31 curated, recent
docxology/lean_niche Python 1 0 2025-08-26 curated
docxology/line_setA thin reader that declares the line set and checks that no two lines share a spelling Python 0 0 2026-08-02 curated, recent
docxology/links HTML 1 0 2026-04-15 uncataloged
docxology/literatureCurated research literature collection — papers, references, and reading lists in Active Inference, ecology, and computational biology Python 2 1 2026-05-03 curated
docxology/markdown_decision_process Python 0 0 2025-10-02 curated
docxology/Markov_Blanket_Detection Python 2 0 2026-07-17 curated, recent
docxology/mdkvMKV-like format and methods for Markdown Python 0 0 2026-08-04 curated, recent
docxology/MetaInformAntIntegration for Ants and Beyond Python 7 1 2026-08-04 curated, recent
docxology/multi-time Python 0 0 2026-03-25 uncataloged
docxology/ntqr_allotmentSortition Upstream of NTQR: how panel formation and size shape ground-truth-free evaluation (deterministic synthetic instrument + single-model Gemma postdoctoral-review companion) Python 1 0 2026-07-01 curated, recent
docxology/ntqr_llmAlgebraic NTQR evaluation study of LLM-persona ensembles on unlabeled votes Python 0 0 2026-06-01 curated, recent
docxology/obsidian-construction-from-text Python 1 0 2025-03-19 curated
docxology/opentirOpenTIR — Open-source tool for multi-repo analysis, code visualization, and software research intelligence Python 3 0 2026-03-24 curated
docxology/p3ifThe Properties, Processes, and Perspectives Inter-Framework (P3IF): Multiplexing interdisciplinary requirements frameworks to manage information risk and foster cognitive security Python 0 0 2026-08-04 curated, recent
docxology/prior_cognitive_artPrivate project mirror for working/prior_cognitive_art in docxology/projects. Python 0 0 2026-07-12 recent
docxology/qr_live_protocol Python 1 1 2026-08-04 curated, recent
docxology/QuadCraftMineCraft with Tetrahedra (Quadray coordinates) JavaScript 8 0 2026-07-31 curated, recent
docxology/QuadMath TeX 2 0 2026-02-13 curated
docxology/README 0 0 2025-03-20 uncataloged
docxology/realizing_emptinessSource-faithful, fully reproducible software operationalizing the formalisms of There is no self-evidence: A physics of emptiness realisation (Sandved-Smith, Fields, Doctor, Laukkonen & Hohwy, 2026). Python 1 0 2026-07-07 curated, recent
docxology/red_lineA personal security boundary and explicit No document for dual-use development Python 0 0 2026-08-02 curated, recent
docxology/service Python 0 0 2025-05-21 curated
docxology/snake Python 1 0 2026-06-29 curated, recent
docxology/steganographer Rust 1 0 2026-08-04 curated, recent
docxology/sunspotCorrelating Github activity with Solar activity Python 1 0 2026-07-15 curated, recent
docxology/symergeticsSymbolic Synergetic for Math & Beyond Python 0 0 2025-09-13 curated
docxology/SynthOBSGolden-ratio (El Gran Sol phi) OBS Studio plugin: live solar-telemetry-driven video/audio transduction + a phi Wavefield Console source, phase-locked to the EGS Gateway. Python 1 0 2026-07-26 curated, recent
docxology/templateProduction-grade scaffold for reproducible computational research — 10-stage DAG pipelines, ≥90% test coverage, cryptographic provenance (SHA-256 + steganographic PDF watermarking), multi-project workspace, AI-agent-ready with AGENTS.md / SKILL.md throughout. Python 18 1 2026-08-04 curated, recent
docxology/template-pitch-deckReproducible, validated short/medium/long PDF+PPTX pitch-deck generation — a public exemplar extracted from docxology/template Python 0 0 2026-08-02 curated, recent
docxology/template-release-smokeIntegration smoke test for template release orchestrator (do not cite) 0 1 2026-05-27 recent
docxology/template_active_inferenceActive inference multi-track exemplar releases Python 1 0 2026-08-03 curated, recent
docxology/template_advanced_literature_reviewAdvanced multi-phase literature-review pipeline exemplar with iterative search refinement, multi-phrase querying, deterministic plus optional LLM-based filtering, and cross-method validation. Python 0 0 2026-08-03 curated, recent
docxology/template_autopoiesisAutopoietic Project Generation: a combinatoric grammar for deterministic runnable project synthesis (DOI: 10.5281/zenodo.21227869) Python 0 0 2026-08-03 curated, recent
docxology/template_autoresearch_projectTemplate autoresearch project exemplar releases Python 0 0 2026-08-03 curated, recent
docxology/template_autoscientistsAutoScientists: a deterministic multi-agent scientific-discovery coordination harness — public exemplar of the docxology/template reproducible-research paradigm (≥90% test coverage, no mocks, double-published GitHub + Zenodo 10.5281/zenodo.20533669). HTML 1 0 2026-08-03 curated, recent
docxology/template_bioinformatics_project Python 0 0 2026-03-14 curated
docxology/template_code_projectTemplate code project exemplar releases Python 0 0 2026-08-03 curated, recent
docxology/template_data_descriptorData Descriptor Template: schema, file inventory, provenance, and release-readiness contract for dataset papers. Exemplar from the docxology/template research monorepo. HTML 0 0 2026-08-03 curated, recent
docxology/template_eda_notebookExploratory Data Analysis: A Reproducible Notebook Template — public exemplar from docxology/template HTML 0 0 2026-08-03 curated, recent
docxology/template_formalIllegal States, Mostly Unrepresentable: strongly typed multiagent colony exemplar (session-typed protocols, affine resource handles, Lean/TLA+ side-specs). From the docxology/template monorepo. Python 0 0 2026-08-03 curated, recent
docxology/template_gold_refinementPublic standalone template exemplar: template_gold_refinement HTML 0 0 2026-08-03 curated, recent
docxology/template_literature_meta_analysisPublic standalone template exemplar: template_literature_meta_analysis TeX 0 0 2026-08-03 curated, recent
docxology/template_madlibDeterministic token-injection exemplar for conditional IMRAD manuscripts Python 0 0 2026-08-03 curated, recent
docxology/template_methods_paperA Domain Language for Specifying Controlled Methods — public exemplar from docxology/template HTML 0 0 2026-08-03 curated, recent
docxology/template_newspaperThe Triplicate: a data-driven large-format newspaper layout engine — public exemplar of the docxology/template reproducible-research paradigm (≥90% test coverage, no mocks, double-published GitHub + Zenodo 10.5281/zenodo.20533675). Python 0 0 2026-08-03 curated, recent
docxology/template_pools_rules_toolsPools, Rules, and Tools: a template-integrated resource architecture exemplar (fonds/rules/tools resource pools). From the docxology/template research monorepo. HTML 0 0 2026-08-03 curated, recent
docxology/template_prose_projectTemplate prose project exemplar releases Python 0 0 2026-08-03 curated, recent
docxology/template_redacted_reportRedacted Report Template: disclosure control and release-audit exemplar (classification ceiling, redaction ledger, mosaic-risk checks). From the docxology/template monorepo. Python 0 0 2026-08-03 curated, recent
docxology/template_registered_reportRegistered Report Template: preregistration, deviations, and claim boundaries for confirmatory research. From the docxology/template research monorepo. HTML 0 0 2026-08-03 curated, recent
docxology/template_search_projectPrivate project mirror for archive/template_search_project in docxology/projects. HTML 0 0 2026-08-03 curated, recent
docxology/template_siaSIA self-improvement harness — deterministic Meta→Target→Feedback exemplar (template_sia) Python 0 0 2026-08-03 curated, recent
docxology/template_storybookStandalone full-page illustrated storybook template from docxology/template Python 0 0 2026-08-03 curated, recent
docxology/template_templateTemplate meta-research exemplar: self-documenting reproducible research repo HTML 0 0 2026-08-03 curated, recent
docxology/template_textbookThe Template Textbook — a modular, fillable scaffold for book-length technical works (data-driven manuscript, tested computational backbone, deterministic figures + Mermaid diagrams, multi-format render). HTML 0 0 2026-08-03 curated, recent
docxology/test_public 0 0 2025-08-30 uncataloged
docxology/thaliaTHALIA: Typed Harness with Analytical Lexical-Integrated Architecture — a typed agentic harness for reproducible long-context memory experiments Python 0 0 2026-08-02 curated, recent
docxology/timeline_generatorTimeline Generator — Knowledge Graph Explorer for historical figures, networks, and OSINT research TypeScript 4 0 2026-07-28 curated, recent
docxology/transformer Python 0 0 2025-10-04 curated
docxology/ultralink-docx HTML 1 0 2025-03-27 curated
docxology/white_lineA typed ledger for the edge of a claim: absence, restraint, and the unknowable Python 0 0 2026-08-02 curated, recent
docxology/witness_register Python 0 0 2026-08-02 curated, recent

Generated at 2026-08-07T21:31:20Z. Curated flags are derived from software.html / pages/SOFTWARE.md.