Open Source Research Software
Route from the primary GitHub inventory into curated publications, software, domain pages, and machine-readable exports.
Curated software catalogOwned projects and Active Inference Institute contributions with publication links.
Publication catalogSearch works across Active Inference, entomology, cognitive security, art, and biology.
Per-work landing pagesCanonical pages for bibliography entries, citations, abstracts, and related works.
Active Inference softwareGNN, CEREBRUM, FEP formalization, belief sharing, and educational infrastructure.
Computational methodsReproducible research templates, MDKV, discovery engines, and developer tooling.
Data catalogJSON exports for works, software, people, organizations, claims, and repository inventory.
Fork archiveForked repositories are indexed separately for provenance and upstream tracking.
Primary Repository Coverage
Generated from the GitHub REST API and cross-marked against the curated software catalog; forks are listed separately.
216Primary repos
171docxology
45AII
208Curated in software catalog
216Public visibility
0Private visibility
0Archived
216Updated in 90 days
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Filter primary repositories by owner, curation status, language, recency, and text across names, topics, and descriptions.
| Repository | Language | Stars | Forks | Updated | Flags |
|---|---|---|---|---|---|
| ActiveInferenceInstitute/.githubOrganization profile and default community health files for the Active Inference Institute | Python | 0 | 0 | 2026-11-08 | curated, recent |
| ActiveInferenceInstitute/act_inf_metaanalysisA computational meta-analysis of the Active Inference literature. An automated LLM pipeline extracts assertions from 849 papers across theory, tools, and domains, structuring them as nanopublications. By mapping these into a citation-weighted knowledge graph, this project provides a reproducible, living review of hypothesis-level consensus. | HTML | 7 | 1 | 2026-11-06 | curated, recent |
| ActiveInferenceInstitute/ActInf_RxInferJulia project connecting Active Inference with RxInfer.jl: a package entry point plus a verified Beta-Bernoulli message-passing example, from the Active Inference Institute. | Python | 2 | 2 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Active_FedferenceRobust federated Active Inference research project connecting FedGVI-style generalized variational inference (discrete-categorical) to Friston et al's federated belief-sharing framework, with a reproducible manuscript and evidence pipeline. | HTML | 0 | 0 | 2026-11-04 | curated, recent |
| ActiveInferenceInstitute/active_fractal_rabbitClosed-loop active-inference research scaffold analyzing synthetic sporadic waypoint data with a pinned FractalRabbit simulator and a real pymdp JAX agent, plus a reproducible manuscript and audit pipeline. | Python | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Active_InferAntsMulti-language Active Inference framework combining ant-colony-optimization-inspired multi-agent simulation with variational message passing, implemented across 50 programming languages for research and benchmarking. | Python | 31 | 6 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/active_inference_battleshipGNN-based active inference for Battleship: playable dashboard, interpretable decisions, reproducible manuscript, and animated lecture. | TypeScript | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/active_inference_language_modelAILM: a fully explicit discrete language stack in pymdp, letters through document position, with a gate-audit method that binds every number to a recorded run. | Python | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Active_Inference_OntologyA controlled vocabulary of 429 Active Inference and Free Energy Principle terms, published as a structured, versioned source with deterministic JSON/CSV exports and a browsable site. | HTML | 16 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/active_inference_powerReproducible statistical-power simulation suite for adaptive studies with an embedded active-inference agent: multiple-testing corrections, sequential e-processes, and action-loop operating characteristics, using real pymdp inference. | Python | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Active_Inference_Un0 | — | 0 | 0 | 2026-09-22 | curated, recent |
| ActiveInferenceInstitute/Active_SkillferenceA high-integrity micro-learning platform for Active Inference and the Free Energy Principle: a validated prerequisite graph whose every quantitative claim is produced by a tested kernel, exported to SkillTree. DOI: 10.5281/zenodo.21865644 | Python | 2 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/ActiveBlockferenceCPU-oriented Python library for discrete Active Inference experiments in radCAD and cadCAD: deterministic grid worlds, multi-agent transitions, generative-model helpers, and fail-closed validation. | Python | 32 | 6 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/ActiveInferenceCategoryTheorySelf-paced "adventure mode" curriculum connecting Active Inference and Category Theory, for exploring category-theoretic tools used in active-inference research. | — | 9 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/ActiveInferenceImplementationsEducational Jupyter notebooks exploring probabilistic and active inference with RxInfer.jl: Beta-Bernoulli coin-bias inference and variational message passing, from the Active Inference Institute. | Jupyter Notebook | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/ActiveInferenceJournalTranscripts, metadata, captions, and translations from the Active Inference Institute's video library — a structured, source-namespaced dataset generated by Journal-Utilities. | HTML | 46 | 9 | 2026-11-08 | curated, recent |
| ActiveInferenceInstitute/AEOSA portable, forkable ontology for modeling active and informational entities, roles, affordances, states, and interaction motifs across scientific ecosystems, with schema-validated YAML/JSON exports. | Python | 9 | 1 | 2026-11-07 | curated, recent |
| ActiveInferenceInstitute/aii-orgActive Inference Institute organizational website. | HTML | 1 | 0 | 2026-11-02 | recent |
| ActiveInferenceInstitute/ATLASAdaptive Thinking and Learning Architecture System: a question-oriented knowledge management framework with entities, patterns, a graph-backed query engine, and pluggable interfaces, from the Active Inference Institute. | Python | 0 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/BiofirmInstallable Python package for reproducible ecological control, bioregion research, and auditable decision analysis, with a pymdp active-inference controller for simulating and comparing ecosystem trajectories. | Python | 4 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Bots | — | 0 | 0 | 2026-09-22 | curated, recent |
| ActiveInferenceInstitute/CEREBRUMCEREBRUM: Case-Enabled Reasoning Engine with Bayesian Representations for Unified Modeling | Python | 14 | 3 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/COGANTDeterministically translates Python, JavaScript, and TypeScript codebases into Active Inference GNN (Generalized Notation Notation) state-space models, with a reverse synthesizer that reconstructs runnable code from a GNN bundle. | Python | 3 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/cognitiveKnowledge base and Python package for discrete and continuous Active Inference: generative models, expected free energy, POMDP simulation, and an executable manuscript with reproducible validation commands. | Python | 23 | 4 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/coursesOpen curriculum for Active Inference education, K-12 through PhD, with 14 level-adapted courses on a shared Free Energy Principle spine plus a Python publishing engine and YouTube transcript archive. | HTML | 13 | 3 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/fep_formalStandalone catalog of formally verified theorems spanning the Free Energy Principle, Active Inference, Bayesian Mechanics, Information Geometry, and Thermodynamics. | Python | 6 | 3 | 2026-11-06 | curated, recent |
| ActiveInferenceInstitute/fundamentalsUnofficial repo for materials and code related to "Fundamentals of Active Inference" (Namjoshi 2026). | Python | 37 | 9 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Garden-of-IrisExperimental toolkit for Iris, a collective-intelligence language model trained on community contributions tagged via the FourThought dialectic (prediction, reflection, statement, question), with a Discord bot and hindsight summarization pipeline. | Python | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/GEN24Pipeline for generating and translating synthetic domain introduction letters and audience-specific calls to action using OpenAI-compatible models, plus the experimental NHIM cognitive/ML module. | Jupyter Notebook | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/gen25Documentation-focused Active Inference Institute project repository, federated through InstituteOS via the .aii sidecar manifest. | — | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Generalized_Notation_NotationMethods for specifying, checking, typing, rendering, executing, analyzing, and visualizing state space models, for Active Inference and Beyond. | Python | 35 | 7 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/GEO_INFERGEO-INFER — a 45-module geospatial inference monorepo from the Active Inference Institute. Spatial analysis, active inference, domain modeling, agent workflows, and reproducible repository validation in one uv/Python workspace (H3, Bayesian models, place & risk). | HTML | 18 | 3 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/institute_websiteStatic, multilingual public resource hub for the Active Inference Institute, served on GitHub Pages with no runtime framework, curated resource directories, and a sanitized public Open Source Map. | HTML | 5 | 1 | 2026-11-06 | recent |
| ActiveInferenceInstitute/ISSSPython pipeline that discovers, downloads, and archives documents (and their metadata) from the Open ISSS website, with async downloading and OCR text extraction stages. | Python | 0 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Journal_UtilitiesUtilities and Documentation for creating contents for the Active Inference Journal | HTML | 11 | 3 | 2026-11-08 | curated, recent |
| ActiveInferenceInstitute/Knowledge-EngineeringArchive of research inputs on active inference and the free energy principle: literature searches, PDF keyword extraction scripts, a PubMed query notebook, ResearchRabbit exports, and an ontology snapshot. | Jupyter Notebook | 6 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/NoOrgTyped TypeScript runtime for coordinating executable agents with durable task state, explicit LLM providers, and observable lifecycle behavior, exposed via an HTTP task API. | TypeScript | 1 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/on_policy_distillationOn-Policy Distillation formalized as Active Inference in finite variational models: reverse-KL free energy, student-induced sampling, a two-agent pymdp classroom, and machine-checked reproducible manuscript artifacts. | Python | 3 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Parr_et_al_2022_ActInf_TextbookStudy materials for the Active Inference Institute's reading group on Parr, Pezzulo & Friston's "Active Inference" (MIT Press, 2022): cleaned plaintext chapters and Julia/Jupyter computational notebooks. | Julia | 7 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/policy_entanglementTunable mean-field deformation framework for multi-stream policy ensembles in active inference, with a machine-checked Lean 4 boundary, pymdp POMDP simulations, and closed-form entanglement decomposition of variational free energy | Python | 3 | 0 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/pymcpExposes the PyMDP active-inference library to AI agents and applications over the Model Context Protocol and a plain REST API: build generative models, infer states and policies, and simulate agents in environments | Python | 3 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/Research-Discovery-EngineResearch prototypes for exploring scientific knowledge as structured, connected information: a React/TypeScript knowledge-graph frontend, a Python network-analysis pipeline, and supporting design documentation for a Conceptual Nexus Model | HTML | 6 | 1 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/StartAI-powered system for generating personalized Active Inference and Free Energy Principle curricula, combining live research (Perplexity) with content generation (OpenRouter), multilingual support, and rich visualizations | Python | 6 | 2 | 2026-11-05 | curated, recent |
| ActiveInferenceInstitute/SymposiumApproved Active Inference Symposium program, consent-aware publishing tools, and searchable methods connected to the Institute's public research repositories. | Python | 15 | 3 | 2026-11-06 | curated, recent |
| ActiveInferenceInstitute/Working_GroupsActive Inference Institute Working Groups: draft Charter, Operating Procedures, and the position paper Coordinating the Field (doi:10.5281/zenodo.23066904) | — | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/active-inference-pocket-labSpin — a browser-based pocket lab for learning active inference and the free energy principle, with chapter modules each rendered in three switchable streams (conversational, animated, LaTeX academic). Installable PWA built on React, Vite, Framer Motion, and KaTeX, with a Vitest suite. | JavaScript | 1 | 1 | 2026-11-02 | curated, recent |
| docxology/active_assembly_theory_and_practiceActive Assembly Theory and Practice — reproducible research package with a versioned archival identifier. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/active_inferenceActive Inference and Free Energy Principle knowledge environment: a semantic knowledge graph linking concepts to simulation and experiment frameworks, interactive visualizations, and three learning tracks (40/35/30 hours) spanning AI, neuroscience, robotics, psychology and education. Python, Node, Docker. | Python | 2 | 0 | 2026-11-04 | curated, recent |
| docxology/active_inference_meta_pragmaticActive Inference as a Meta-Pragmatic Framework: executable GNN models, synthetic evidence, manuscript and reproducible research. | HTML | 1 | 1 | 2026-11-02 | curated, recent |
| docxology/active_torchferencePyTorch framework for Active Inference agents that act by minimizing variational and expected free energy — no reward functions, no reinforcement learning. Modular beliefs, policy, and environment modules with YAML configs, rollout/horizon planning, and orchestrators for logging, plotting, and animation. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/ActiveInferAntsActive Inference simulation framework for ant colonies and other decentralized multi-agent systems — models foraging, trail formation and task allocation with multiscale sensory/motor/learning agents, and maps runs onto real ant species for validation. | Python | 3 | 0 | 2026-11-03 | curated, recent |
| docxology/ActiveInferenceSyntheticActive Inference — A Synthetic Overview: executable teaching paper, numerical demonstrations, Lean proofs, and twenty-minute lecture. | Python | 3 | 0 | 2026-11-05 | curated, recent |
| docxology/AGEINTOpen curriculum on agentic intelligence, governance, and AI safety — organized in parts with Mermaid and Python-rendered figures, sourced from ODNI, CIA, NIST and NATO publications, built by a Python/uv pipeline into a PDF with claim-calibration and reference-integrity audits. | HTML | 4 | 1 | 2026-11-04 | curated, recent |
| docxology/agentic_os_securityAgentic Security and Operating Systems — deep review and prospectus of OpSec, Cognitive Security, and Agentic Cyber Security | TeX | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/AgenticMeshTool-component framework for an Active Inference agentic mesh — an abstract async ToolComponent interface with typed metadata, parameter and return-value dataclasses, plus two worked tools: a sandboxed MathTool and a discrete-POMDP Active Inference agent (A/B/C/D/E matrices, variational free energy, habit learning) with matplotlib diagnostics. | Python | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/alphacogantActive Inference model of recursive corporate self-improvement, specified in GNN and run on a NumPy inference engine — maps capital allocation to control policies and marginal return to expected free energy, with bootstrap sensitivity analysis, manuscript figures, and a test suite. Not financial advice. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/ant-pheromonePython model (pheromoneModel.py) showing that a single pheromone reproduces big-headed ant foraging and recruitment patterns previously explained with two pheromones, replicating the Dussutour et al. (2009) J. Exp. Biol. experiments. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/ant_stackAnt Stack — a reproducible research workspace for embodied AI and ant-inspired systems, pairing complexity-energetics analysis with automated Matplotlib/Mermaid figures and Pandoc + XeLaTeX manuscript rendering. Run manifests emit SHA-256 checksums per artifact, with a pytest suite. | Python | 0 | 1 | 2026-11-03 | curated, recent |
| docxology/antropyDimension-agnostic spatial entropy and complexity analysis: HDSE, information, ordinal, spectral, and multiscale methods with typed configuration and reproducible research. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/Autonomous-Drone-Navigation-in-AirSim-With-Active-InferenceActive inference drone controller for the AirSim simulator — RxInfer.jl maintains Bayesian beliefs over a 5D state (distance, azimuth, elevation, safety, obstacle density) and picks waypoints by minimizing expected free energy across pragmatic, epistemic, and risk terms. Julia bridged to Python via PyCall. | Julia | 0 | 1 | 2026-11-02 | curated, recent |
| docxology/BeeStackModular honeybee simulation scaffold in five typed layers — BeeBody (FlyBody locomotion), BeeBrain (odor and waggle-dance decoding), BeeMind (active inference policy selection), BeeSwarm (MuJoCo colony physics, pheromones), BeeNiche (comb, thermals, foraging) — with curated empirical datasets and pytest coverage gates. | Python | 1 | 1 | 2026-11-04 | curated, recent |
| docxology/biol-1BIOL-1 General Biology course materials for College of the Redwoods — modules from the study of life through capstone systems synthesis, with slides, labs, homework, practice tests, module answer keys, and course dashboards. | HTML | 0 | 0 | 2026-11-01 | curated, recent |
| docxology/biol-8BIOL-8 Human Anatomy & Physiology course materials from College of the Redwoods — slides, labs, homework, practice tests, module keys, and progress dashboards organized per module, so instructors can fork a full semester of A&P teaching resources. | HTML | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/biology_textbookOpen-source introductory biology textbook, Introduction to Biology: A Generative Approach — chapters with paired paper labs and an assessment-question bank, figures generated programmatically via matplotlib and Mermaid, a curated reference list and glossary, built with uv and pytest. CC BY 4.0. | Python | 1 | 0 | 2026-11-08 | curated, recent |
| docxology/black_linePython method instrument for declaring and auditing research and engineering practice — evaluate_work() scores submissions against a versioned registry of tag-practice cells, returning ALIGNED, NEEDS_EVIDENCE, NEEDS_REWORK or OUTSIDE_SCOPE with present/missing/stale witness surfaces and coverage analytics. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/blakeWilliam Blake corpus custody and reusable evidence methods: acquisition, recovery, retrieval, statistics and rights-bounded research workflows. | Python | 1 | 0 | 2026-11-07 | curated, recent |
| docxology/blake_jiangEssay pipeline triangulating Jiang Xueqin's 2026 AI lecture, William Blake's Single Vision, and Friston's Active Inference as one failure mode: pathological prior dominance. Generates a full-length manuscript with its equations and light/dark figures from Python (uv, pytest, pandoc/xelatex). | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/Blakean_EntomologyInvertebrate lives and imagery in William Blake: source-bound concordance, contextual readings, conditional taxonomy and illustrated working paper. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/Blakean_FederalismComposition without capture: poetic states, plural nations and person-specific institutional review in an illustrated Blakean working paper. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/blue_lineBlue Line — A stewardship instrument for maintained commitments: systems, obligations, | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/bondWrapper manuscript for PROJECT BOND, the Special-Agent Operations Compendium — aggregates its constituent packages into one PDF with James Bond film chapters plus infrastructure chapters, merging every abstract, section, figure and references.bib. Deterministic byte-identical rebuilds, with a test suite and a Zenodo DOI. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-a_view_to_a_killA View to a Kill (1985) — ZORIN: a PROJECT BOND film package formalizing Zorin's scheme as deterministic computational models behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-apiTHE PROTOCOL — layer 1 of the BOND suite: the frozen mission contract every film package implements and every coordinator consumes. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-casino_royale_1967Casino Royale (1967) — FIVE 00s: a PROJECT BOND film package modeling the farce in which five operatives all answer to the codename James Bond, behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-casino_royale_2006Casino Royale (2006) — LE CHIFFRE: a PROJECT BOND film package of infrastructure-free domain cores bound to the suite's frozen mission protocol by one thin adapter. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-cliTHE FRONT DOOR — layer 4 of the BOND suite: the unified terminal front door, routing verb-first commands to the built layers and mapping their outcomes to exit codes. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-coordinatorMISSION CONTROL — layer 2 of the BOND suite: the registry and situation room that discovers and drives the film packages. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-diamonds_are_foreverDiamonds Are Forever (1971) — CONFLICT STONE: a PROJECT BOND film package whose deepening phase is DIAMOND NET, behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-die_another_dayDie Another Day (2002) — ICARUS: a PROJECT BOND film package modeling identity replacement and extreme-environment operations as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-dr_noDr. No (1962) — CRAB KEY: a PROJECT BOND film package for radiation and isotope forensics, behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-for_your_eyes_onlyFor Your Eyes Only (1981) — ATAC: a PROJECT BOND film package implementing the ATAC recovery-and-targeting mission with real mathematics behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-from_russia_with_loveFrom Russia with Love (1963) — LURES: a PROJECT BOND film package implementing the film's operational concepts as a deterministic mission-software package behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-goldeneyeGoldenEye (1995) — ARKANGEL: a PROJECT BOND film package modeling the film's coupled threat surfaces as deterministic closed-form physics behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-goldfingerGoldfinger (1964) — GRAND SLAM: a PROJECT BOND film package modeling the film's operational concepts as deterministic scientific modules across its attack surfaces, behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-licence_to_killLicence to Kill (1989) — ROGUE: a PROJECT BOND film package built from pure domain cores behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-live_and_let_dieLive and Let Die (1973) — SAN MONIQUE: a PROJECT BOND film package modeling Kananga's narcotics operation on San Monique as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-moonrakerMoonraker (1979) — DRAX: a PROJECT BOND film package implementing the technical concepts of the DRAX operation as a deterministic scientific package behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-never_say_never_againNever Say Never Again (1983) — REMOUNT: a PROJECT BOND film package, built as a remount of Thunderball (1965) behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-no_time_to_dieNo Time to Die (2021) — HERACLES: a PROJECT BOND film package modeling the film's pharmaco-forensic concepts as real mathematics with a shared provenance ledger behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-octopussyOctopussy (1983) — FABERGÉ: a PROJECT BOND film package that implements the film's investigative problems as pure deterministic algorithm modules behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-on_her_majestys_secret_serviceOn Her Majesty's Secret Service (1969) — PIZ GLORIA: a PROJECT BOND film package modeling aerosol bioweapon dispersion and the alpine operation's planning concepts as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-opsQUARTERMASTER — layer 4 of the BOND suite: fleet health, aggregate quality gates and provisioning for the film packages and shared infrastructure. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-orchestratorDAG 00 — layer 3 of the BOND suite: the mission DAG runner that executes multi-package film missions end to end over the mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-quantum_of_solaceQuantum of Solace (2008) — QUANTUM: a PROJECT BOND film package bound to the suite's frozen mission protocol for discovery by slug. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-skyfallSkyfall (2012) — SILVA: a PROJECT BOND film package modeling the cyberattack on MI6, the exfiltration of the NATO agent list, a legacy-system exposure audit and the Skyfall estate defence plan behind the suite's frozen mission protocol. | Python | 1 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-spectreSpectre (2015) — NINE EYES: a PROJECT BOND film package implementing the Nine Eyes surveillance-sharing programme and the SPECTRE brotherhood as pure deterministic analysis modules behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-the_living_daylightsThe Living Daylights (1987) — SNIPER'S NEST: a PROJECT BOND film package modeling the film's operational concepts as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-the_man_with_the_golden_gunThe Man with the Golden Gun (1974) — SOLEX: a PROJECT BOND film package implementing the solar concentrator, the mirror-walled lair and the assassin's contract book as real algorithms behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-the_spy_who_loved_meThe Spy Who Loved Me (1977) — LIPARUS: a PROJECT BOND film package modeling the Liparus supertanker and the film's other set pieces as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-the_world_is_not_enoughThe World Is Not Enough (1999) — ELEKTRA: a PROJECT BOND film package modeling the film's operational pillars as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-thunderballThunderball (1965) — DISCO VOLANTE: a PROJECT BOND film package modeling the underwater recovery of two hijacked NATO nuclear bombs as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/bond-tomorrow_never_diesTomorrow Never Dies (1997) — CARVER: a PROJECT BOND film package modeling the media empire, the stealth cruiser and the GPS spoof as deterministic computations behind the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-utilitiesQ-BRANCH — layer 0 of the BOND suite: the shared foundation of field-utility primitives — a classic-cipher suite with cryptanalysis helpers, deterministic codenames, and mission utilities. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/bond-you_only_live_twiceYou Only Live Twice (1967) — VOLCANO: a PROJECT BOND film package with a deterministic computation core exposed through the suite's frozen mission protocol. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/cascadiaModular Python pipeline for geospatial data integration on the H3 hexagonal grid — downloads sources with caching and retry logic, standardizes them to H3 cells (default resolution 9), merges multiple datasets, and serves togglable layers in a Dash/Plotly dashboard. GeoPandas, uv, with a test suite. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/coasysLocal-first control plane for the github.com/coasys repository fleet: clones and syncs repos, tracks freshness and CI metadata, auto-detects build/start/deploy commands across npm, Rust, Deno, Nix, Make and Holochain, and serves a SQLite-backed dashboard for dependency-ordered rollout. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/codomyrmexModular Python coding and agent platform — LLM agents, graph RAG, static analysis, git ops, cloud and container deployment, all exposed as Model Context Protocol tools. uv-managed, with a zero-mock test suite. | Python | 10 | 2 | 2026-11-05 | curated, recent |
| docxology/cognitiveCognitive ecosystem framework pairing Active Inference agent models with an Obsidian-compatible markdown knowledge graph — generates executable Python from markdown specs, runs multi-agent simulations, and auto-validates probabilistic constraints. | Python | 16 | 0 | 2026-11-03 | curated, recent |
| docxology/cognitive-engineHybrid neurosymbolic AI framework in Python pairing a seven-level fractal symbolic reasoner with a PyTorch/Transformers probabilistic pathway, over persistent long-term memory. Seven modules: Fractal, Probabilistic, Memory, Unipixel, MMM cross-layer pattern mining, Code Execution, and PEFF ethics/security. | Python | 3 | 0 | 2026-11-03 | curated, recent |
| docxology/cognitive_case_diagramsExecutable categorical models of linguistic case: synthetic statistical studies, DisCoPy diagrams, Bayesian and distributional utilities, bounded MCP tools, and a reproducible manuscript with explicit mathematical and empirical limits. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/cognitive_integrityCognitive Integrity Framework (CIF): Formal security architecture for multiagent systems | Python | 1 | 0 | 2026-11-04 | curated, recent |
| docxology/CogSecSkillsLibrary of analytic skills for cognitive security and tradecraft — structured analytic techniques, OSINT integrity, counterintelligence, and information-environment analysis, each with a harness-neutral spec and adapters. Python/uv CLI, archived on Zenodo. | HTML | 9 | 3 | 2026-11-04 | curated, recent |
| docxology/cohereantsComputational study of whether insects can sense infrared: Python modules covering atmospheric IR transmission, cuticular hydrocarbon spectroscopy, sensilla morphology, behavioral statistics, Fermi estimates, and metamaterial design, generating figures. Framed as engineering bounds and protocol design, not biological proof. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/courseCurriculum Repository System: a FastAPI platform for authoring and delivering courses, modules and lessons in Markdown, HTML, LaTeX, PDF and SCORM, backed by PostgreSQL, MongoDB, Redis and Elasticsearch, with auto-graded assessments, xAPI analytics, Dublin Core metadata and JWT role-based access. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/crescent-cityMunicipal code intelligence platform for Crescent City, CA — scrapes ecode360 ordinances and serves them through streaming RAG over Server-Sent Events, a California Code and U.S.C. citation parser, legislative history diffs, and tsunami, earthquake, wildfire and tide alert monitors. Succeeded by crescent-city-intel. | TypeScript | 2 | 0 | 2026-11-03 | curated, recent |
| docxology/crescent-city-intelCrescent City civic intelligence with municipal code search, civic and hazard monitors, news, meetings, events, local RAG, and public snapshots with source provenance. Built with Bun, TypeScript and Playwright. | TypeScript | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/crescent_cityReproducible scholarly history of Crescent City, California — from Tolowa Dee-ni' settlement through the 1964 tsunami to today, with deterministically generated matplotlib figures, BibTeX validation, and PDF build via Pandoc + XeLaTeX + pandoc-crossref (Python, uv, pytest). | Python | 0 | 0 | 2026-11-03 | recent |
| docxology/curriculumEducational Course Generator: a Python and local Ollama pipeline that turns one YAML config into a full course — outline JSON, full-length lectures, labs, study notes, Mermaid diagrams, assessments and a generated static website. A no-mocks test suite, with --no-interactive mode for CI. | HTML | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/daf-jevdaf-jev: composable Python toolkit for TypeSafe's Jev (System One) decision API — question builders, confidence gates, evaluator, calibration, CLI, MCP server, agent skill | Python | 7 | 1 | 2026-11-04 | curated, recent |
| docxology/daf-oknPull, analyze, visualize, and contribute to the Open Knowledge Network (okn.us) | Python | 0 | 1 | 2026-11-05 | curated, recent |
| docxology/davis-ca-intelDavis and Yolo County civic intelligence: thin regional orchestration powered by region-intel | TeX | 1 | 0 | 2026-11-02 | curated, recent |
| docxology/democreateDemoCreate turns declarative YAML demo specs into narrated 4K videos — software tours, terminal sessions, website walkthroughs and research-paper overviews with Whisper word-level subtitle sync, local Kokoro neural voice, and optional Manim scenes. Pure Python over ffmpeg/poppler, with a tested codebase. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/dicklesworthstone_meta_operatorMeta-operator over the Dicklesworthstone GitHub corpus: clone, verify upstream sync, orchestrate, interpret, dashboard | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/Digi-PPPiPActive inference study of two-person collaborative drawing on shared digital surfaces — a React/Vite plus Socket.IO live drawing app over a typed Python core computing variational free energy, inter-brain synchrony and narrative entropy, with generated figures, a test suite and a Zenodo-archived manuscript. | TeX | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/docxologyPublic research and software index for Daniel Ari Friedman, with publications, code, videos, teaching resources, and citation metadata across active inference, entomology, cognitive security, and art. | HTML | 2 | 0 | 2026-11-07 | recent |
| docxology/docxplusPython toolkit building intelligent document containers — ordinary .docx and .odt files that also carry signed, encrypted payloads through five OOXML/ODF channels: custom XML parts, package parts, metadata properties, image LSB steganography, and MCE AlternateContent. Ed25519 manifests, AES-256-GCM, Merkle binding. | Python | 1 | 0 | 2026-11-08 | curated, recent |
| docxology/dotscopeRust structural compiler that keeps AI coding agents from breaking your codebase — maps explicit imports plus temporal coupling from Git history, scores each file's gravity, and injects DOTSCOPE_GRAVITY_WARNING context over MCP into compatible agent harnesses. Designed for large repositories. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/DuckRabbitPython package that generates optical, auditory and audio-visual illusions as reproducible scientific stimuli — catalogued illusions exported to PNG, WAV, GIF, MP4 and NPZ with SHA-256 manifests, deterministic seeds, publication figures with source-data sidecars, and a test suite. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/ento_linguisticsComputational study of how entomology's vocabulary encodes assumptions about ants and social insects — mines PubMed and arXiv abstracts, classifies terms into six domains (individuality, behavior, power, reproduction, kinship, economics), and maps NetworkX concept networks. Python, seeded for reproducibility, with a test suite. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/entofileReference implementation of ENTO, a flat ZIP archive bundling independently typed research tracks — time series, genomics, spectrograms, provenance — under per-track AES-256-GCM encryption with PADME length padding and manifest-bound verification. Python/uv, Zenodo-archived. | Python | 1 | 0 | 2026-11-04 | curated, recent |
| docxology/EntoLawSource-anchored reference for entomological law, mapping insects across eight legal roles — witness, regulated threat, protected subject, property, invention, defendant, moral patient, weapon. Machine-readable registries bind cases like Daubert and Chakrabarty, statutes, agencies and species to a verifiable claim ledger. | HTML | 0 | 0 | 2026-11-07 | curated, recent |
| docxology/EvoJumpPython framework modeling ontogenetic and evolutionary trajectories as a cross-sectional laser sweeping through developmental time — jump-diffusion, Ornstein-Uhlenbeck, and Levy process engines plus Bayesian analytics, 3D animation, and a CLI, with a test suite and example scripts. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/flickFlickr bulk archiver in Python — downloads every public photo from a given username or profile URL at the largest available size via flickrapi, and writes a JSON sidecar per image with title, description, tags, date taken, GPS coordinates, and view count. Keys loaded from a .env file. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/FORMINDEXAnalysis platform for the FORMIS ant-literature database — converts the ~80,000-record BibTeX export to JSON, then builds publication-trend and co-authorship visualizations plus LLM summaries, translations and podcasts via NotebookLM, OpenAI and Perplexity. | Rich Text Format | 2 | 0 | 2026-11-03 | curated, recent |
| docxology/FractiSkillsFractiSkills: one portable agent SKILL per page of the SS Vibelandia Omniversal Canvas — Skillarum-rendered, DOI 10.5281/zenodo.22712651 | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/godel_ivmPython visualization engine for Buckminster Fuller's Synergetics geometry in the Isotropic Vector Matrix (IVM) coordinate system — renders sphere-to-vector and frequency-based polyhedron transformations as PNG plots, GIF animations, and HTML explorers via NumPy and Matplotlib, with a test suite. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/goferenceActive inference in Go — variational free energy belief updating and expected free energy policy selection for POMDP agents, with categorical, Gaussian, and Dirichlet belief representations on gonum. Concurrent policy evaluation and benchmarks, for robotics, game AI, and cognitive modeling. | Go | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/golden_lineAspiration tracker for the four-line governance set: evaluates long-horizon aspirations against markers and counter-signals, returning TOWARD, INQUIRY, DRIFTING, or NOT_OBSERVED, plus all_invariants structural checks and dated readings for currentness. Python, zero dependencies. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/grateful_dataCitation-bound data compendium for the Grateful Dead: 3,341 shows, 645 songs across 40,757+ performances, 912 venues, and 7,122 Internet Archive recordings, unified by a Python/uv parser pipeline with provenance tracking, bootstrap statistics, and an interactive HTML explorer for setlists and personnel timelines. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/green_lineGreen Line — A capacity-under-development instrument: the green line of the docxology | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/hhs-opendataAnalysis of the HHS Medicaid Provider Spending open dataset, ~11 GB covering Jan 2018 to Dec 2024: DuckDB queries the CSVs in place with Polars, scikit-learn z-score outlier detection, and Matplotlib/Seaborn charts of cost-per-claim and cost-per-beneficiary at provider x procedure x month grain. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/infra-calcROI calculator for self-hosted LLM inference — models whether serving a 70B model on local GPUs pays off at a given per-minute rate, factoring VRAM, concurrent threads, utilization, hardware cost, and electricity. HTML/JS front end plus Python (NumPy, Matplotlib) break-even heatmaps. | JavaScript | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/institute_websiteGitHub Pages site for the Active Inference Institute — Node build (build.mjs) that renders curated JSON-defined pages plus a searchable source atlas extracted from AII.pdf, so every published claim links back to an auditable source page. Includes a Python local dev server and CI deploy. | HTML | 0 | 0 | 2026-11-03 | recent |
| docxology/itraceWebcam eye-tracking analysis toolkit — pure NumPy/SciPy core computing gaze in degrees of visual angle, I-VT/I-DT saccade detection with main-sequence fits, microsaccades (Engbert & Kliegl), and pupil diameter with blink interpolation. Optional MediaPipe/OpenCV capture, FastAPI live view, Streamlit dashboard. | Python | 1 | 1 | 2026-11-02 | curated, recent |
| docxology/ivm-xyzPython computational geometry package for converting between XYZ Cartesian and IVM quadray (Isotropic Vector Matrix) coordinates — exact volume and area calculations, Buckminster Fuller's Synergetics concentric hierarchy of polyhedra, and matplotlib 3D visualization, with a test suite. | Python | 1 | 1 | 2026-11-02 | curated, recent |
| docxology/lean_nicheLean 4 research environment for formal proofs and verified algorithms — Lean files covering prime number theory, set theory, sorting and GCD correctness, and Lyapunov stability for dynamical systems, plus Python (uv) visualization utilities and GitHub Actions workflows for continuous verification. | Python | 1 | 0 | 2026-11-04 | curated, recent |
| docxology/line_setRegistry and validator for the Red, Black, Golden, and White Line governance packages: reads installed siblings, checks their enum vocabularies for collisions, and reports SET_LEGIBLE, SET_PARTIAL, SET_COLLIDING, or SET_UNDECLARED. Pure Python stdlib, CLI, and SVG figures. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/linksNine-stage Python pipeline that turns a curated URL list into a synthesized political platform — scrapes and caches pages, extracts principles, policies, values, and goals with the Claude Agent SDK, then generates essays and Markdown/HTML/JSON platform documents with DALL-E 3 imagery. | Python | 1 | 0 | 2026-11-03 | recent |
| docxology/literaturePython literature-review toolkit: unified search across arXiv, PubMed, Semantic Scholar, CrossRef, OpenAlex and DBLP, parallel PDF download with retry tracking and indexing, local Ollama LLM summarization, BibTeX export, and meta-analysis plots including PCA, keyword clustering and publication trends. | Python | 3 | 1 | 2026-11-03 | curated, recent |
| docxology/markdown_decision_processTreats Markdown documents as Markov decision processes — parses structure into a NetworkX state space, optimizes it with reinforcement learning policies, tracks POMDP belief updates, and generates text from learned Markov chains. Python with Pandoc conversion, with a test suite. | Python | 0 | 0 | 2026-11-07 | curated, recent |
| docxology/Markov_Blanket_DetectionDMBD — PyTorch implementation of dynamic Markov blanket detection for time-series data, finding how parent/child/spouse neighborhoods and sensory, active, and internal state partitions shift over time via conditional independence tests, temporal windowing, and information-flow analysis. Follows Beck & Ramstead (2025). | Python | 3 | 0 | 2026-10-26 | curated, recent |
| docxology/math4wisdom-superhuman-docs-archiveNode.js archival pipeline that snapshots a Math4Wisdom Superhuman Docs document through the read-only MCP API — extracting pages, tables, rows and embedded media into Markdown, JSON and CSV with SHA-256 content addressing, image dedup, and validation gates that discard failed runs. | TypeScript | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/mdkvPython library and CLI for .mdkv, a ZIP container that packs multilingual layered Markdown into one file — seven track types (primary, translation, commentary, code, reference, media_ref, revision) with a YAML manifest, plus regex search, diff, stats, and deterministic filtered HTML/Markdown export. FastAPI GUI included. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/MetaInformAntMETAINFORMANT is a Python multi-omic bioinformatics toolkit for DNA, RNA-seq, protein, epigenome and single-cell analysis, GWAS with fine-mapping and eQTL, joint PCA and a broad plot-type library — uv-managed and tested, demoed on multi-species sample data. | Python | 8 | 2 | 2026-11-03 | curated, recent |
| docxology/millennium_auditForensic audit of the MillenniumLean Clay-proof package (AIX Global): kernel claims reproduced, none of the six Clay Millennium Problems resolved by the theorem types. Zenodo DOI 10.5281/zenodo.22243473 | Python | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/multi-timeMulti-frequency time series toolkit on sktime — handles patchy and irregular series with frequency detection, gap analysis, ADF/KPSS stationarity and Granger causality tests, then forecasts via Naive, Exponential Smoothing, Theta, AutoARIMA, SARIMAX, and ensembles scored by MAE/MAPE/MASE/RMSSE, with a pytest suite. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/nockchain-migrationOperator-gated wizard and tooling for migrating Nockchain wallets from legacy v0 notes to v1 P2PKH addresses | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/ntqr_allotmentResearch testbed pairing allotment (maximin stratified sortition, Flanigan et al. Nature 2021) with ntqr algebraic logic for ground-truth-free evaluation of noisy binary classifiers — a 96-seed grid over 3/6/9/12-judge panels and 300-item corpora, validated against live gemma3:4b reviewers via Ollama. | Python | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/ntqr_llmLabel-free evaluation of LLM judge ensembles: 3 market personas across 6 local Ollama models vote on 64 scenarios, and the NTQR algebraic-geometry solver recovers per-persona accuracy from votes alone — no answer key. Includes error-independence controls, bootstrap 95% CIs, and results-injected manuscript builds. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/obsidian-construction-from-textPython pipeline that turns scientific publications in Markdown into a linked Obsidian vault — spaCy (en_core_web_md) extracts people, organizations, concepts, and technologies, NetworkX builds the graph, and the CLI writes cross-linked Entities, Topics, and Publications notes plus JSON graph data. | Python | 1 | 0 | 2026-11-05 | curated, recent |
| docxology/OmniLatticeTextbookThe Infinite Octaves Omni-Lattice Textbook — a modular synthesis of the SynthOBS engine papers (SS Vibelandia), with tested formalisms and deterministic figures | HTML | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/opentirSource analysis and documentation toolkit for GitHub ecosystems: local repository management, Python/JavaScript/TypeScript/Java/Go extraction, cross-repository metrics, and offline MkDocs reports. | Python | 3 | 1 | 2026-11-02 | curated, recent |
| docxology/p3ifP3IF (Properties, Processes, Perspectives Inter-Framework) in Python — compose and validate requirements patterns across security, healthcare, and cognitive-security domains, then explore them through 3D interactive visualizations and a Flask dashboard. Pydantic models, synthetic data generators, pytest suite. | HTML | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/prior_cognitive_artManuscript project asking why cognitive priors exist, applying Tinbergen's four questions to hierarchical Bayes and the ontogenetic regress — argument modules, deterministic figures, a symbol glossary with closure checks, and a reproducible Python build to PDF, HTML and slides. | Python | 0 | 0 | 2026-11-05 | recent |
| docxology/qr_live_protocolQR Live Protocol (QRLP) — Python toolkit that generates live, verifiable QR codes carrying NTP-synced timestamps, Bitcoin/Ethereum block hashes, HMAC and public-key signatures, plus OpenTimestamps attestation. Flask/SocketIO server drops into OBS Studio as a browser source, with a tested codebase. | Python | 1 | 1 | 2026-11-08 | curated, recent |
| docxology/QuadCraftTetrahedral voxel game engine in C++/OpenGL that replaces cubic blocks with quadray coordinates — fractal terrain generation, modified marching tetrahedrons meshing, wireframe and quadray debug views, plus standalone 4D browser games built on the same Fuller/Urner coordinate system. | JavaScript | 8 | 0 | 2026-11-08 | curated, recent |
| docxology/QuadMathQuadray coordinate and 4D tetrahedral lattice mathematics in Python: integer volume quantization, lattice optimization, a no-mocks pytest suite, and a render_pdf.sh pipeline regenerating figures, data and a Markdown-to-LaTeX manuscript. Zenodo DOI 10.5281/zenodo.16887791. | Python | 2 | 0 | 2026-11-08 | curated, recent |
| docxology/realizing_emptinessSource-grounded finite-surrogate research pipeline for QRFs, active inference, Bayesian model reduction, and bounded quantum and criticality diagnostics, with audited manuscript artifacts. | Python | 2 | 0 | 2026-11-02 | curated, recent |
| docxology/reasonReferee-style scientific review, requested by the author, of Mihail Tkalic's Foundations of Reason 8.0 and Engineering of Reason 3.5. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/red_lineVersioned, executable declaration of personal refusals in dual-use software — evaluate_action() checks proposed work against declared red lines with typed exemptions and oversight tiers, backed by a SHA-256 warrant canary, with deterministic evaluations, generated figures and a tested Python codebase. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/region-intelShared regional civic intelligence methods, verified acquisition, alert adapters, search, RAG, analytics, publication and manuscript tooling | TypeScript | 0 | 0 | 2026-11-05 | curated, recent |
| docxology/reno-nv-intelComposable civic intelligence for Reno, Nevada: shared region-intel methods, retained public evidence and reproducible template manuscripts | HTML | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/rikishiSUMO ontology operator, reasoning workbench, source-bound FEP connections, and reproducible manuscript | Python | 0 | 0 | 2026-11-07 | curated, recent |
| docxology/servicePython service-catalog toolkit built on an XML schema (clinamenic_service.xml) — parses packages, tiers, retainers, and flat/recurring/tiered pricing into dataclasses, then validates IDs and exports JSON, CSV, D3.js graph data, and matplotlib price-comparison charts from one CLI. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/silver_lineSilver Line — What is preserved, what is entrusted to whom, what is allowed to lapse | HTML | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/SkillarumTurns selected public website pages into portable SKILL.md documents for agent harnesses; five inspectable stages with provenance, safety-bounded crawling, and evidence-gated research outputs. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/snakeSnake-in-the-Box solver in Python: heuristically pruned breadth-first search with bit-array vertex tracking and lower-dimension priming to find long induced paths in n-dimensional hypercubes, reaching bounds of 732 (11D), 1439 (12D) and 2854 (13D), plus validation, record database and 3D visualization. | Python | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/steganographerRust workspace for tamper-evident media — embeds BLAKE3 hashes, Ed25519 signatures, and visible QR watermarks into live video and audio via LSB, DCT, and spread-spectrum steganography. Crates for the core library, CLI, GStreamer and an Axum dashboard, with a test suite and real-time webcam verification. | Rust | 1 | 0 | 2026-11-08 | curated, recent |
| docxology/sunspotPython toolkit correlating a GitHub user's commit history with solar and geomagnetic activity — sunspot numbers (SILSO), F10.7 flux, Dst and ap indices from OMNI2/NOAA SWPC. Computes lagged Pearson/Spearman correlations, Lomb-Scargle periodograms, and bootstrap CIs with heatmaps and multi-user comparison. | Python | 1 | 0 | 2026-11-02 | curated, recent |
| docxology/symergeticsPython library for exact all-integer symbolic computation in Buckminster Fuller's Synergetics — rational SymergeticsNumber arithmetic with no floating-point error, Quadray 4D tetrahedral coordinates, polyhedral volume ratios, Scheherazade numbers and primorials, and matplotlib/plotly/ASCII output, with a full test suite. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/SynthOBSGolden-ratio broadcast console for OBS plus FractiSynth, a native libobs C plugin whose phi-scaled video and audio filters are driven by live NOAA solar-wind telemetry — fail-closed on bad data, Lean 4 invariant proofs, and a pytest suite. | Python | 1 | 0 | 2026-11-04 | curated, recent |
| docxology/templateReproducible research publishing template for Python research projects: a declared pipeline, canonical exemplars, and multi-format outputs. | Python | 23 | 1 | 2026-11-08 | curated, recent |
| docxology/template-pitch-deckPitch decks as reproducible build artifacts: one YAML content source renders six deliverables — short/medium/long decks in PDF (ReportLab) and PPTX (python-pptx) — with byte-identical rebuilds, citation enforcement, a cliche linter, live token checks against repo test counts and DOIs, and per-slide QR deep links. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template-release-smokeThrowaway smoke-test repo for the docxology/template release orchestrator — exercises end-to-end GitHub release creation and manuscript PDF asset upload via scripts/publish_project_release.py. No template source code here; releases and Zenodo records from it are test artifacts, not citable. | — | 0 | 1 | 2026-11-02 | recent |
| docxology/template_active_inferenceTemplate for composing multi-track active inference manuscripts — closed-form analytics, pymdp simulations, Lean 4 proofs, GNN/ontology notation — bound to shared sections by a typed sheaf engine with six machine-checked composition laws and a symbol gluing certificate. | Python | 2 | 0 | 2026-11-03 | curated, recent |
| docxology/template_advanced_literature_reviewTemplate for reproducible multi-phase literature reviews: three sequential arXiv and OpenAlex search phases, deterministic year/citation/venue filters, Jaccard cross-phase overlap checks, and optional local-LLM abstract classification. Python, pandas, networkx, YAML config. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_autopoiesisTemplate that generates whole runnable child projects — src, tests, scripts, docs — from a combinatoric grammar over domains and kernel primitives, with SHA-256 byte-stable output, recompute verification of tree hashes, and meta-tests against green-by-construction test theater. | Python | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/template_autoresearch_projectTemplate for a bounded, deterministic AutoResearch loop over a local ML task: numpy-only models on an MNIST subset, evidence-linked claims, checksummed research-object manifests, fail-closed schema validation, and human-review gates instead of autonomous approval. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_autoscientistsTestbed for the five coordination mechanisms in the AutoScientists paper on self-organizing agent teams: shared experiment log, dead-end registry (36 redundant re-probes to 0), effect-size ranking, noise-band confirmation, stagnation reorganization. Python, uv, no mocks. | HTML | 2 | 0 | 2026-11-02 | curated, recent |
| docxology/template_bioinformatics_projectBoilerplate scaffold for reproducible bioinformatics projects: enforced directory layout separating immutable raw data, processed intermediates, scripts, notebooks, results and logs, with YAML-driven configuration, Python virtualenv setup and standard logging instead of hardcoded parameters. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_code_projectPython template for single-method computational research: algorithms in src/, seeded experiments, auto-generated figures, and a manuscript where every number is a token filled from code. uv, pytest, and Zenodo/PyPI/arXiv publishing. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_data_descriptorScaffold for publishing a dataset with a machine-readable data contract: JSON descriptors drive schema fingerprints, field-level constraint checks, SHA-256 file verification and quality gates, emitting data-dictionary and provenance-flow figures plus a FAIR release manifest with durable Zenodo identifiers. | HTML | 1 | 1 | 2026-11-02 | curated, recent |
| docxology/template_eda_notebookExploratory data analysis template demonstrating the notebook-to-tested-source workflow: explore a committed CSV fixture in Jupyter, then migrate logic into a pandas library (clean, normalize, group means, correlation ranking, figures) behind pytest and a logic-free walkthrough notebook. | HTML | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_formalIllegal-states-unrepresentable design in strongly-typed Python, demonstrated on a decentralized ant-robot colony simulation: algebraic data types, session-typed protocol phases, affine transaction handles, nominal AgentId/TxnId types, a fault-injectable message bus, and active-inference agents minimizing expected free energy. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_gold_refinementManuscript-refinement exemplar that models drafting as gold metallurgy: five stages (ore, smelting, assaying, cupellation, certification) monotonically raise a paper's measured purity from 37.5% to nine-nines via claim-support checks, citation audits, seeded SHA-256 token injection and NetworkX/matplotlib figures. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/template_literature_meta_analysisSystematic literature review pipeline: dispatches ten retrieval engines (arXiv, OpenAlex, Semantic Scholar, Crossref, PubMed) with graceful degradation, deduplicates by DOI/arXiv/OpenAlex ID or title hash, then runs TF-IDF embeddings, NMF topic models and citation networks into an auto-written bibliometric manuscript. | TeX | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/template_madlibConfig-driven manuscript generator with auditable token provenance: a single manuscript/config.yaml hydrates a full IMRAD paper plus PNG figures, token-inventory JSON and PDF/HTML/slide renders, with seeded-digest determinism and every substituted word traced back to its source YAML path. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_methods_paperScaffold for methods and protocol papers where the contribution is the procedure language itself: frozen-dataclass Python model compiles method plans to JSON, CSV worklists and Mermaid DAGs through four validation gates, with unit/dimensional safety, Kahn-order determinism and SHA-256 provenance hash chains. | Python | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/template_newspaperPrint-ready newspaper generator in pure Python: renders an 11x17 US tabloid PDF (The Triplicate) from YAML masthead, stories and ads using ReportLab, Pillow halftone engravings and matplotlib charts, with flowing multi-column layout and broadsheet/tabloid trim swapped by data edit alone. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_pools_rules_toolsResearch-infrastructure scaffold wiring three resource pools (fonds, rules, tools) into one self-validating Python pipeline: typed manifests with schema-versioned receipts, fail-closed jsonschema validation, soft vs strong rule checks, tool entrypoint discovery, and a generated manuscript with matplotlib figures. | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_prose_projectScaffold for manuscript and editorial projects — runs prose quality gates over a draft: readability metrics, structure validation, and BibTeX citation integrity, with thresholds from manuscript/config.yaml producing manuscript_report.json, checks.json, review_report.md, and word-count/readability/citation-density plots. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/template_redacted_reportScaffold for controlled disclosure of sensitive reports (FOIA, intelligence, legal) — applies classification ceilings, source protection, and reviewer gates, then emits redaction_audit.json and release_ledger.json with SHA-256 hashes while sanitized text stays in memory. Validators flag residual markers and mosaic risk. | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/template_registered_reportScaffold for registered reports, preregistrations, and replications — freezes hypotheses, outcomes, exclusion rules, and the analysis plan into a hash-stamped ledger, logs every deviation, and audits claims so confirmatory and exploratory results stay separate. Emits hypothesis-outcome maps, analysis DAGs, deviation timelines, permutation tests. | HTML | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_search_projectScaffold for literature review and evidence synthesis — searches arXiv, Crossref, and local corpora, deduplicates hits, enriches abstracts and fulltext, then runs local Ollama (gemma3:4b) per-paper and corpus-level synthesis into references.bib, reading_report.md, corpus.json, and coverage plots. Deterministic caching, pinned seeds. | Python | 1 | 0 | 2026-11-03 | curated, recent |
| docxology/template_siaEvaluation harness scaffold for self-improvement agents (SIA) — runs a Meta to Target to Feedback loop across generations, scores runs on the mini_classify task with split public/private data to catch overfitting, and replays recorded_generations fixtures for deterministic reruns. Python, uv, pytest; swap your agent into src/loop.py. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/template_storybookScaffold for illustrated picture books — renders a full-page PDF storybook from content/story.yaml using ReportLab and procedural graphics, with per-page scripts you can add, remove, or reorder, plus PNG plates, contact sheet, and render manifest. Demo storybook: Tessa the tetrahedron and Ciro the cube. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/template_templateReference exemplar of the docxology template family — a self-describing repo whose manuscript regenerates from its own codebase: introspection walks the YAML pipeline DAG and module inventory, a metrics engine fills tokens, and scripts draw architecture diagrams. Ships the multi-platform publishing workflow (Zenodo, PyPI, IPFS, arXiv). | Python | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/template_textbookProject scaffold for book-length manuscripts — declare parts, chapters, labs, and question banks in one config.yaml and get auto-numbering, cross-references, deterministic matplotlib figures and Mermaid diagrams, and PDF/HTML/EPUB/DOCX output. A structural-contract pytest suite; uv-managed. | HTML | 0 | 0 | 2026-11-03 | curated, recent |
| docxology/thaliaTHALIA is a typed agentic harness pairing DSPy compiler-driven optimization with layered memory — Inspector, BM25/embedding hybrid Retriever, cited Reasoner, append-only SQLite memory gate, and MIPRO/GEPA-style config search. Deterministic, zero-mock pytest suite, evaluated on LongMemEval_S. | Python | 2 | 0 | 2026-11-08 | curated, recent |
| docxology/thanks_for_nothingReproducible finite-model research on gratitude, absence and model revisability. Manuscript and code: doi.org/10.5281/zenodo.23402517 | HTML | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/timeline_generatorBrowser-based temporal knowledge graph for biographical networks: React and D3 force-directed views over a Fastify + Neo4j backend, weighted relationship types with confidence scores, timeline date brushing, Perplexity-powered figure research, and a REST API, with a test suite. | TypeScript | 4 | 0 | 2026-11-03 | curated, recent |
| docxology/transformerFirst-principles transformer implementation in PyTorch built for interpretability rather than speed — traces the residual stream and K/V attention pathways (6 layers x 32 positions = 2.3 million paths) with a visualization suite, preset configs from debug to xlarge, and tests. | Python | 0 | 0 | 2026-11-02 | curated, recent |
| docxology/ultralink-docxUltraLink — JavaScript/Node knowledge-graph framework for entities, typed relationships, and temporal versioning, with vector embeddings for semantic similarity. Exports one graph to JSON, GraphML, CSV, Obsidian markdown, interactive D3.js sites, and a compressed full-blob format. MIT, on npm. | HTML | 1 | 0 | 2026-11-04 | curated, recent |
| docxology/white_lineAbsence ledger for the four-line governance set: records epistemic gaps, withheld claims, and deliberate non-assertion as NAMED, UNRESOLVED, WITHHELD, or NOT_RECORDED, decays dated observations past their review horizon, and exports line.report-envelope/1.0 reports. | Python | 0 | 0 | 2026-11-08 | curated, recent |
| docxology/WISLIM-auditCritical audit and red-team analysis of David Wishengrads Life is Most Important in Life | Python | 0 | 0 | 2026-11-04 | curated, recent |
| docxology/witness_registerPython registry that co-registers audit reports from the four line instruments without merging, scoring, or overriding them: nine-field envelopes keep each line's native status verbatim, typed records capture blocks and tensions, and an append-only digest chain seals the history. | Python | 0 | 0 | 2026-11-08 | curated, recent |
Generated at 2026-11-08T20:58:55Z. Curated flags are derived from software.html / pages/SOFTWARE.md.