# 📚 Papers Directory

Documentation index for all publications. Each folder contains:
- **README.md** — Paper overview, abstract, keywords, and citation
- **AGENTS.md** — Agent roles and extraction log
- **SKILL.md** — Claude Code-compatible skill definition with YAML frontmatter
- **full_text.md** — Full text extracted from the PDF or ODT/DOCX source (when available), with page-level structure and inline image references
- **images/** — Figures and images extracted from the PDF or document source (when available)

For new GitHub + Zenodo releases, Zenodo-only records, and GitHub-only software triage, use the canonical publication intake runbook: [docs/operations/publication-sync.md](../docs/operations/publication-sync.md).

## Papers (206)

| # | Folder | PDF | Year | Topic |
|---|--------|-----|------|-------|
| 1 | [2015_CryptoJews](2015_CryptoJews/) | ✅ | 2015 | CryptoJews |
| 2 | [2015_EhrlichialInfection](2015_EhrlichialInfection/) | ✅ | 2015 | EhrlichialInfection |
| 3 | [2015_HoneyBeeEvolution](2015_HoneyBeeEvolution/) | ✅ | 2015 | HoneyBeeEvolution |
| 4 | [2016_AntGenetics](2016_AntGenetics/) | ✅ | 2016 | AntGenetics |
| 5 | [2016_ForagingGene](2016_ForagingGene/) | ✅ | 2016 | ForagingGene |
| 6 | [2016_NuclearStructure](2016_NuclearStructure/) | ✅ | 2016 | NuclearStructure |
| 7 | [2017_MutAnts](2017_MutAnts/) | ✅ | 2017 | MutAnts |
| 8 | [2017_TwoLineages](2017_TwoLineages/) | ✅ | 2017 | TwoLineages |
| 9 | [2018_ArgentineAnt](2018_ArgentineAnt/) | ✅ | 2018 | ArgentineAnt |
| 10 | [2018_DopamineForaging](2018_DopamineForaging/) | ✅ | 2018 | DopamineForaging |
| 11 | [2018_MVEE](2018_MVEE/) | ✅ | 2018 | MVEE |
| 12 | [2018_PPPiP](2018_PPPiP/) | ✅ | 2018 | PPPiP |
| 13 | [2018_WoodliceAndMen](2018_WoodliceAndMen/) | ✅ | 2018 | WoodliceAndMen |
| 14 | [2019_AntConsciousness](2019_AntConsciousness/) | ✅ | 2019 | AntConsciousness |
| 15 | [2019_DennettExplained](2019_DennettExplained/) | ✅ | 2019 | DennettExplained |
| 16 | [2019_ForagerHydration](2019_ForagerHydration/) | ✅ | 2019 | ForagerHydration |
| 17 | [2019_PhDDissertation](2019_PhDDissertation/) | ✅ | 2019 | PhDDissertation |
| 18 | [2020_BehaviorEngineering](2020_BehaviorEngineering/) | ✅ | 2020 | BehaviorEngineering |
| 19 | [2020_DistributedPhysiology](2020_DistributedPhysiology/) | ✅ | 2020 | DistributedPhysiology |
| 20 | [2020_EmergentTeams](2020_EmergentTeams/) | ✅ | 2020 | EmergentTeams |
| 21 | [2020_GeneExpressionForagers](2020_GeneExpressionForagers/) | ✅ | 2020 | GeneExpressionForagers |
| 22 | [2020_GreatPreset](2020_GreatPreset/) | ✅ | 2020 | GreatPreset |
| 23 | [2020_InnovatorsCatechism](2020_InnovatorsCatechism/) | ✅ | 2020 | InnovatorsCatechism |
| 24 | [2020_NeuroscienceDecision](2020_NeuroscienceDecision/) | ✅ | 2020 | NeuroscienceDecision |
| 25 | [2020_NeurotransmitterVariation](2020_NeurotransmitterVariation/) | ✅ | 2020 | NeurotransmitterVariation |
| 26 | [2021_ActiveInferants](2021_ActiveInferants/) | ✅ | 2021 | ActiveInferants |
| 27 | [2021_DigitalRhetorical](2021_DigitalRhetorical/) | ✅ | 2021 | DigitalRhetorical |
| 28 | [2021_ModelingConflict](2021_ModelingConflict/) | ✅ | 2021 | ModelingConflict |
| 29 | [2021_NarrativeEcosystems](2021_NarrativeEcosystems/) | ✅ | 2021 | NarrativeEcosystems |
| 30 | [2021_NarrativeInformationMgmt](2021_NarrativeInformationMgmt/) | ✅ | 2021 | NarrativeInformationMgmt |
| 31 | [2022_ActiveDiffusion](2022_ActiveDiffusion/) | ✅ | 2022 | ActiveDiffusion |
| 32 | [2022_ActiveInferenceOntology](2022_ActiveInferenceOntology/) | ✅ | 2022 | ActiveInferenceOntology |
| 33 | [2022_FreeWillSapolsky](2022_FreeWillSapolsky/) | ✅ | 2022 | FreeWillSapolsky |
| 34 | [2022_HypercertEcosystems](2022_HypercertEcosystems/) | ✅ | 2022 | HypercertEcosystems |
| 35 | [2022_InformationCommons](2022_InformationCommons/) | ✅ | 2022 | InformationCommons |
| 36 | [2022_MirrorTest](2022_MirrorTest/) | ✅ | 2022 | MirrorTest |
| 37 | [2022_StigmergicAnnotation](2022_StigmergicAnnotation/) | ✅ | 2022 | StigmergicAnnotation |
| 38 | [2022_SystematicLiteratureAnalysis](2022_SystematicLiteratureAnalysis/) | ✅ | 2022 | SystematicLiteratureAnalysis |
| 39 | [2022_TrustFinder](2022_TrustFinder/) | ✅ | 2022 | TrustFinder |
| 40 | [2023_AIAccountability](2023_AIAccountability/) | ✅ | 2023 | AIAccountability |
| 41 | [2023_AII_v1](2023_AII_v1/) | ✅ | 2023 | AII_v1 |
| 42 | [2023_AccountActiveInference](2023_AccountActiveInference/) | ✅ | 2023 | AccountActiveInference |
| 43 | [2023_AntsAging](2023_AntsAging/) | ✅ | 2023 | AntsAging |
| 44 | [2023_BlakeFuller](2023_BlakeFuller/) | ✅ | 2023 | BlakeFuller |
| 45 | [2023_CognitiveSovereignty](2023_CognitiveSovereignty/) | ✅ | 2023 | CognitiveSovereignty |
| 46 | [2023_DistributedScience](2023_DistributedScience/) | ✅ | 2023 | DistributedScience |
| 47 | [2023_GNN](2023_GNN/) | ✅ | 2023 | GNN |
| 48 | [2023_GenerativeResearchTeams](2023_GenerativeResearchTeams/) | ✅ | 2023 | GenerativeResearchTeams |
| 49 | [2023_GuidedTourMinds](2023_GuidedTourMinds/) | ✅ | 2023 | GuidedTourMinds |
| 50 | [2023_HoneyBeeGeneExpression](2023_HoneyBeeGeneExpression/) | ✅ | 2023 | HoneyBeeGeneExpression |
| 51 | [2023_NSFReporting](2023_NSFReporting/) | ✅ | 2023 | NSFReporting |
| 52 | [2023_OpenScienceSensemaking](2023_OpenScienceSensemaking/) | ✅ | 2023 | OpenScienceSensemaking |
| 53 | [2023_P3IF](2023_P3IF/) | ✅ | 2023 | P3IF |
| 54 | [2023_PostdocReview](2023_PostdocReview/) | ✅ | 2023 | PostdocReview |
| 55 | [2023_SinglePheromone](2023_SinglePheromone/) | ✅ | 2023 | SinglePheromone |
| 56 | [2023_ToComment](2023_ToComment/) | ✅ | 2023 | ToComment |
| 57 | [2023_VariationalSynthesis](2023_VariationalSynthesis/) | ✅ | 2023 | VariationalSynthesis |
| 58 | [2023_VideoEntomology](2023_VideoEntomology/) | ✅ | 2023 | VideoEntomology |
| 59 | [2024_AII_v2](2024_AII_v2/) | ❌ | 2024 | AII_v2 |
| 60 | [2024_BlattodeaDiversity](2024_BlattodeaDiversity/) | ✅ | 2024 | BlattodeaDiversity |
| 61 | [2024_CurioCards](2024_CurioCards/) | ✅ | 2024 | CurioCards |
| 62 | [2024_DigitalTwins](2024_DigitalTwins/) | ✅ | 2024 | DigitalTwins |
| 63 | [2024_FarmWorks](2024_FarmWorks/) | ✅ | 2024 | FarmWorks |
| 64 | [2024_FederatedInference](2024_FederatedInference/) | ✅ | 2024 | FederatedInference |
| 65 | [2024_ImageMemeResearch](2024_ImageMemeResearch/) | ✅ | 2024 | ImageMemeResearch |
| 66 | [2024_InfiniteImaginarium](2024_InfiniteImaginarium/) | ✅ | 2024 | InfiniteImaginarium |
| 67 | [2024_MathArtBlake](2024_MathArtBlake/) | ❌ | 2024 | MathArtBlake |
| 68 | [2024_OntologySUMO](2024_OntologySUMO/) | ✅ | 2024 | OntologySUMO |
| 69 | [2024_PaleolithicRockstars](2024_PaleolithicRockstars/) | ❌ | 2024 | PaleolithicRockstars |
| 70 | [2024_PopulationSearch](2024_PopulationSearch/) | ✅ | 2024 | PopulationSearch |
| 71 | [2024_QuantumDreams](2024_QuantumDreams/) | ✅ | 2024 | QuantumDreams |
| 72 | [2024_SensemakingFederation](2024_SensemakingFederation/) | ✅ | 2024 | SensemakingFederation |
| 73 | [2024_SharedProtentions](2024_SharedProtentions/) | ✅ | 2024 | SharedProtentions |
| 74 | [2025_5thSymposium](2025_5thSymposium/) | ✅ | 2025 | 5thSymposium |
| 75 | [2025_AII_v3](2025_AII_v3/) | ✅ | 2025 | AII_v3 |
| 76 | [2025_AccessibilityActiveInference](2025_AccessibilityActiveInference/) | ✅ | 2025 | AccessibilityActiveInference |
| 77 | [2025_AgentAndNiche](2025_AgentAndNiche/) | ✅ | 2025 | AgentAndNiche |
| 78 | [2025_AntStack](2025_AntStack/) | ✅ | 2025 | AntStack |
| 79 | [2025_AntStackComplexity](2025_AntStackComplexity/) | ✅ | 2025 | AntStackComplexity |
| 80 | [2025_AuBI](2025_AuBI/) | ✅ | 2025 | AuBI |
| 81 | [2025_CEREBRUM](2025_CEREBRUM/) | ✅ | 2025 | CEREBRUM |
| 82 | [2025_CognitiveArtScience](2025_CognitiveArtScience/) | ✅ | 2025 | CognitiveArtScience |
| 83 | [2025_ConsciousnessAnts](2025_ConsciousnessAnts/) | ✅ | 2025 | ConsciousnessAnts |
| 84 | [2025_DiscoveryEngine](2025_DiscoveryEngine/) | ✅ | 2025 | DiscoveryEngine |
| 85 | [2025_EvoJump](2025_EvoJump/) | ✅ | 2025 | EvoJump |
| 86 | [2025_MDKV](2025_MDKV/) | ✅ | 2025 | MDKV |
| 87 | [2025_MarkdownDecisionProcess](2025_MarkdownDecisionProcess/) | ✅ | 2025 | MarkdownDecisionProcess |
| 88 | [2025_OnTime](2025_OnTime/) | ✅ | 2025 | OnTime |
| 89 | [2025_QuadMath](2025_QuadMath/) | ✅ | 2025 | QuadMath |
| 90 | [2025_ResNei](2025_ResNei/) | ✅ | 2025 | ResNei |
| 91 | [2025_Symergetics](2025_Symergetics/) | ✅ | 2025 | Symergetics |
| 92 | [2025_SystemsProcesses](2025_SystemsProcesses/) | ✅ | 2025 | SystemsProcesses |
| 93 | [2025_TemporalDepth](2025_TemporalDepth/) | ✅ | 2025 | TemporalDepth |
| 94 | [2025_Thoughtseeds](2025_Thoughtseeds/) | ✅ | 2025 | Thoughtseeds |
| 95 | [2026_BeforePragmatism](2026_BeforePragmatism/) | ✅ | 2026 | BeforePragmatism |
| 96 | [2026_CognitiveIntegrity](2026_CognitiveIntegrity/) | ✅ | 2026 | CognitiveIntegrity |
| 97 | [2026_DoorsOfPerception](2026_DoorsOfPerception/) | ✅ | 2026 | DoorsOfPerception |
| 98 | [2026_ReproducibleResearch](2026_ReproducibleResearch/) | ✅ | 2026 | ReproducibleResearch |
| 99 | [2026_Bimetalism](2026_Bimetalism/) | ✅ | 2026 | Bimetalism |
| 100 | [2026_EntoLinguistics](2026_EntoLinguistics/) | ✅ | 2026 | EntoLinguistics |
| 101 | [2026_ActInfMetaAnalysis](2026_ActInfMetaAnalysis/) | ✅ | 2026 | ActInfMetaAnalysis |
| 102 | [2026_FocusedAttentionMeditation](2026_FocusedAttentionMeditation/) | ❌ | 2026 | FocusedAttentionMeditation |
| 103 | [2026_CognitiveCaseDiagrams](2026_CognitiveCaseDiagrams/) | ✅ | 2026 | CognitiveCaseDiagrams |
| 104 | [2026_FEPLean](2026_FEPLean/) | ✅ | 2026 | FEPLean |
| 105 | [2020_FacilitatorsCatechism](2020_FacilitatorsCatechism/) | ✅ | 2020 | FacilitatorsCatechism |
| 106 | [2026_BlakeJiang](2026_BlakeJiang/) | ✅ | 2026 | BlakeJiang |
| 107 | [2026_CrescentCity](2026_CrescentCity/) | ✅ | 2026 | CrescentCity |
| 108 | [2026_BiologyTextbook](2026_BiologyTextbook/) | ✅ | 2026 | BiologyTextbook |
| 109 | [2026_PolicyEntanglementActive](2026_PolicyEntanglementActive/) | ✅ | 2026 | PolicyEntanglementActive |
| 110 | [2026_BoundedAutoResearchTiny](2026_BoundedAutoResearchTiny/) | ✅ | 2026 | BoundedAutoResearchTiny |
| 111 | [2026_ConvergenceAnalysisGradient](2026_ConvergenceAnalysisGradient/) | ✅ | 2026 | ConvergenceAnalysisGradient |
| 112 | [2026_EditorialQualityAt](2026_EditorialQualityAt/) | ✅ | 2026 | EditorialQualityAt |
| 113 | [2026_TemplateApproachReproducible](2026_TemplateApproachReproducible/) | ✅ | 2026 | TemplateApproachReproducible |
| 114 | [2026_ActiveInferenceMulti](2026_ActiveInferenceMulti/) | ✅ | 2026 | ActiveInferenceMulti |
| 115 | [2026_BeeStack](2026_BeeStack/) | ✅ | 2026 | BeeStack |
| 116 | [2026_WhenDoBugs](2026_WhenDoBugs/) | ✅ | 2026 | WhenDoBugs |
| 117 | [2026_SelfImprovementAgent](2026_SelfImprovementAgent/) | ✅ | 2026 | SelfImprovementAgent |
| 118 | [2025_BiofirmDevelopmentWith](2025_BiofirmDevelopmentWith/) | — | 2025 | BiofirmDevelopmentWith |
| 119 | [2025_ConCatEnate](2025_ConCatEnate/) | ✅ | 2025 | ConCatEnate |
| 120 | [2025_Graphspeak](2025_Graphspeak/) | ✅ | 2025 | Graphspeak |
| 121 | [2025_BevCycPositPrimitive](2025_BevCycPositPrimitive/) | ✅ | 2025 | BevCycPositPrimitive |
| 122 | [2025_BeaconsPreEmulation](2025_BeaconsPreEmulation/) | ✅ | 2025 | BeaconsPreEmulation |
| 123 | [2025_ConCatEnate2](2025_ConCatEnate2/) | ✅ | 2025 | ConCatEnate2 |
| 124 | [2024_PushPull](2024_PushPull/) | ✅ | 2024 | PushPull |
| 125 | [2023_NaturalAIBased](2023_NaturalAIBased/) | ✅ | 2023 | NaturalAIBased |
| 126 | [2023_ATLAS2](2023_ATLAS2/) | ✅ | 2023 | ATLAS2 |
| 127 | [2023_TranscriptActiveInference](2023_TranscriptActiveInference/) | ✅ | 2023 | TranscriptActiveInference |
| 128 | [2023_ModernNostrIndex](2023_ModernNostrIndex/) | ✅ | 2023 | ModernNostrIndex |
| 129 | [2023_SlidesIris](2023_SlidesIris/) | ✅ | 2023 | SlidesIris |
| 130 | [2022_CanonicalNeuralNetworks](2022_CanonicalNeuralNetworks/) | — | 2022 | CanonicalNeuralNetworks |
| 131 | [2022_InteroceptionAsModeling](2022_InteroceptionAsModeling/) | — | 2022 | InteroceptionAsModeling |
| 132 | [2022_Transcript](2022_Transcript/) | — | 2022 | Transcript |
| 133 | [2022_WorkedExampleBayesian](2022_WorkedExampleBayesian/) | — | 2022 | WorkedExampleBayesian |
| 134 | [2022_TranscriptDiscussions](2022_TranscriptDiscussions/) | — | 2022 | TranscriptDiscussions |
| 135 | [2022_TrackingPublicSensemaking](2022_TrackingPublicSensemaking/) | ✅ | 2022 | TrackingPublicSensemaking |
| 136 | [2021_Transcript](2021_Transcript/) | ✅ | 2021 | Transcript |
| 137 | [2021_CollaborativeWritingCatechism](2021_CollaborativeWritingCatechism/) | ✅ | 2021 | CollaborativeWritingCatechism |
| 138 | [2020_ReimaginingMaps](2020_ReimaginingMaps/) | ✅ | 2020 | ReimaginingMaps |
| 139 | [2020_InfiniteGamesInfinite](2020_InfiniteGamesInfinite/) | ✅ | 2020 | InfiniteGamesInfinite |
| 140 | [2026_MusicNeverStopped](2026_MusicNeverStopped/) | ✅ | 2026 | MusicNeverStopped |
| 141 | [2026_DeterministicTestbedSelf](2026_DeterministicTestbedSelf/) | ✅ | 2026 | DeterministicTestbedSelf |
| 142 | [2026_RecoveringLLMPersona](2026_RecoveringLLMPersona/) | ✅ | 2026 | RecoveringLLMPersona |
| 143 | [2026_Triplicate](2026_Triplicate/) | ✅ | 2026 | Triplicate |
| 144 | [2026_TemplateTextbook](2026_TemplateTextbook/) | ✅ | 2026 | TemplateTextbook |
| 145 | [2026_ITrace](2026_ITrace/) | ✅ | 2026 | ITrace |
| 146 | [2026_DemoCreate](2026_DemoCreate/) | ✅ | 2026 | DemoCreate |
| 147 | [2026_ENTO](2026_ENTO/) | ✅ | 2026 | ENTO |
| 148 | [2026_GeneralizedNotationNotationGNN](2026_GeneralizedNotationNotationGNN/) | — | 2026 | GeneralizedNotationNotationGNN |
| 149 | [2026_COGANT](2026_COGANT/) | ✅ | 2026 | COGANT |
| 150 | [2026_AGEINT](2026_AGEINT/) | ✅ | 2026 | AGEINT |
| 151 | [2026_PolicyDistillationAs](2026_PolicyDistillationAs/) | ✅ | 2026 | PolicyDistillationAs |
| 152 | [2026_TemplateMadlib](2026_TemplateMadlib/) | ✅ | 2026 | TemplateMadlib |
| 153 | [2026_CaliforniaPublicRecords](2026_CaliforniaPublicRecords/) | ✅ | 2026 | CaliforniaPublicRecords |
| 154 | [2026_CogSecSkills](2026_CogSecSkills/) | ✅ | 2026 | CogSecSkills |
| 155 | [2026_RealizingEmptiness](2026_RealizingEmptiness/) | ✅ | 2026 | RealizingEmptiness |
| 156 | [2026_LivingMetaAnalysis](2026_LivingMetaAnalysis/) | ✅ | 2026 | LivingMetaAnalysis |
| 157 | [2026_RefinementGold](2026_RefinementGold/) | ✅ | 2026 | RefinementGold |
| 158 | [2026_AlphaCOGANT](2026_AlphaCOGANT/) | ✅ | 2026 | AlphaCOGANT |
| 159 | [2026_MappingWilliamBlake](2026_MappingWilliamBlake/) | ✅ | 2026 | MappingWilliamBlake |
| 160 | [2026_SortitionUpstreamNTQR](2026_SortitionUpstreamNTQR/) | ✅ | 2026 | SortitionUpstreamNTQR |
| 161 | [2026_ExploratoryDataAnalysis](2026_ExploratoryDataAnalysis/) | ✅ | 2026 | ExploratoryDataAnalysis |
| 162 | [2026_DomainLanguageSpecifying](2026_DomainLanguageSpecifying/) | ✅ | 2026 | DomainLanguageSpecifying |
| 163 | [2026_EntomologicalLaw](2026_EntomologicalLaw/) | ✅ | 2026 | EntomologicalLaw |
| 164 | [2026_ShapeBetween](2026_ShapeBetween/) | ✅ | 2026 | ShapeBetween |
| 165 | [2026_AutopoieticProjectGeneration](2026_AutopoieticProjectGeneration/) | ✅ | 2026 | AutopoieticProjectGeneration |
| 166 | [2026_TemplatePitchDeck](2026_TemplatePitchDeck/) | ✅ | 2026 | TemplatePitchDeck |
| 167 | [2026_ReproducibleLiteratureSynthesis](2026_ReproducibleLiteratureSynthesis/) | ✅ | 2026 | ReproducibleLiteratureSynthesis |
| 168 | [2026_RegisteredReportTemplate](2026_RegisteredReportTemplate/) | ✅ | 2026 | RegisteredReportTemplate |
| 169 | [2026_RedactedReportTemplate](2026_RedactedReportTemplate/) | ✅ | 2026 | RedactedReportTemplate |
| 170 | [2026_PoolsRulesTools](2026_PoolsRulesTools/) | ✅ | 2026 | PoolsRulesTools |
| 171 | [2026_IllegalStatesMostly](2026_IllegalStatesMostly/) | ✅ | 2026 | IllegalStatesMostly |
| 172 | [2026_DataDescriptorTemplate](2026_DataDescriptorTemplate/) | ✅ | 2026 | DataDescriptorTemplate |
| 173 | [2026_PriorCognitiveArt](2026_PriorCognitiveArt/) | ✅ | 2026 | PriorCognitiveArt |
| 174 | [2026_ActiveFractalRabbit](2026_ActiveFractalRabbit/) | ✅ | 2026 | ActiveFractalRabbit |
| 175 | [2026_FourfoldVision](2026_FourfoldVision/) | ✅ | 2026 | FourfoldVision |
| 176 | [2026_DuckRabbit](2026_DuckRabbit/) | ✅ | 2026 | DuckRabbit |
| 177 | [2026_SynthOBSFractiSynth](2026_SynthOBSFractiSynth/) | ✅ | 2026 | SynthOBSFractiSynth |
| 178 | [2026_ActiveInferencePower](2026_ActiveInferencePower/) | ✅ | 2026 | ActiveInferencePower |
| 179 | [2026_WitnessRegister](2026_WitnessRegister/) | ✅ | 2026 | WitnessRegister |
| 180 | [2026_LineSet](2026_LineSet/) | ✅ | 2026 | LineSet |
| 181 | [2026_WhiteLine](2026_WhiteLine/) | ✅ | 2026 | WhiteLine |
| 182 | [2026_PersonalRedLines](2026_PersonalRedLines/) | ✅ | 2026 | PersonalRedLines |
| 183 | [2026_GoldenLine](2026_GoldenLine/) | ✅ | 2026 | GoldenLine |
| 184 | [2026_BlackLine](2026_BlackLine/) | ✅ | 2026 | BlackLine |
| 185 | [2026_Codomyrmex](2026_Codomyrmex/) | ✅ | 2026 | Codomyrmex |
| 186 | [2026_THALIA](2026_THALIA/) | ✅ | 2026 | THALIA |
| 187 | [2026_PROJECTBONDSpecial](2026_PROJECTBONDSpecial/) | ✅ | 2026 | PROJECTBONDSpecial |
| 188 | [2026_DigiPPPiP](2026_DigiPPPiP/) | ✅ | 2026 | DigiPPPiP |
| 189 | [2026_RobustBeliefSharing](2026_RobustBeliefSharing/) | ✅ | 2026 | RobustBeliefSharing |
| 190 | [2026_ActiveSkillference](2026_ActiveSkillference/) | ✅ | 2026 | ActiveSkillference |
| 191 | [2026_DocxplusIntelligentDocument](2026_DocxplusIntelligentDocument/) | ✅ | 2026 | DocxplusIntelligentDocument |
| 192 | [2026_CognitiveIntegrityFramework](2026_CognitiveIntegrityFramework/) | ✅ | 2026 | CognitiveIntegrityFramework |
| 193 | [2026_CognitiveIntegrityFramework2](2026_CognitiveIntegrityFramework2/) | ✅ | 2026 | CognitiveIntegrityFramework2 |
| 194 | [2026_MillenniumAudit](2026_MillenniumAudit/) | ✅ | 2026 | MillenniumAudit |
| 195 | [2026_Skillarum](2026_Skillarum/) | ✅ | 2026 | Skillarum |
| 196 | [2026_FractiSkills](2026_FractiSkills/) | ✅ | 2026 | FractiSkills |
| 197 | [2026_AgenticSecurityOperating](2026_AgenticSecurityOperating/) | ✅ | 2026 | AgenticSecurityOperating |
| 198 | [2026_JevPractice](2026_JevPractice/) | ✅ | 2026 | JevPractice |
| 199 | [2026_GreenLine](2026_GreenLine/) | ✅ | 2026 | GreenLine |
| 200 | [2026_BlueLine](2026_BlueLine/) | ✅ | 2026 | BlueLine |
| 201 | [2026_VioletLine](2026_VioletLine/) | ✅ | 2026 | VioletLine |
| 202 | [2026_SilverLine](2026_SilverLine/) | ✅ | 2026 | SilverLine |
| 203 | [2026_CoordinatingField](2026_CoordinatingField/) | ✅ | 2026 | CoordinatingField |
| 204 | [2026_ActiveInferenceSynthetic](2026_ActiveInferenceSynthetic/) | ✅ | 2026 | ActiveInferenceSynthetic |
| 205 | [2026_Antropy](2026_Antropy/) | ✅ | 2026 | Antropy |
| 206 | [2026_ActiveInferenceAs](2026_ActiveInferenceAs/) | ✅ | 2026 | ActiveInferenceAs |
## Scripts

All repository code lives under [`code/`](../code/); the per-folder docs in this directory are generated from `paper_metadata.json` by:

| Script | Purpose |
|--------|---------|
| [`code/orchestrators/regenerate_docs.py`](../code/orchestrators/regenerate_docs.py) | Regenerate every per-folder README.md / AGENTS.md / SKILL.md from `paper_metadata.json` (`--apply` to write, `--force` to overwrite) |
| [`code/orchestrators/extract_paper_texts.py`](../code/orchestrators/extract_paper_texts.py) | Extract full text and images from all paper PDFs (`--force` to overwrite existing extractions) |
| [`code/orchestrators/sync_publications_html.py`](../code/orchestrators/sync_publications_html.py) | Rebuild `publications.html` head meta + `data/publications-ld.json` mainEntity from `pages/BIBLIOGRAPHY.md` |
| [`code/src/biblio_table.py`](../code/src/biblio_table.py) | Shared eight-column `pages/BIBLIOGRAPHY.md` row parser |

## Metadata

| File | Purpose |
|------|---------|
| `paper_metadata.json` | Canonical per-folder metadata index — one entry per `YYYY_Topic/` folder |