# AGENTS.md — EvoJump: Stochastic Modeling of Evolutionary Ontogenetic Trajectories

**Paper**: EvoJump: Stochastic Modeling of Evolutionary Ontogenetic Trajectories (2025)
**Area**: Active Inference
**Authors**: Daniel A. Friedman

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## Agent Roles

### 📖 Research Agent
**Focus**: Deep analysis of EvoJump: Stochastic Modeling of Evolutionary Ontogenetic Trajectories
**Tasks**:
- Analyze core argument: EvoJump examines evolutionary transitions and discontinuities through the Active Inference framework, exploring how systems undergo qualitative jumps ...
- Evaluate: Examines evolutionary transitions through Active Inference lens
- Evaluate: Connects major transitions theory with Free Energy Principle

### 🔬 Methods Agent
**Focus**: Methodological rigor and replication
**Tasks**:
- Assess and document: Evolutionary transition analysis
- Assess and document: Active Inference evolutionary modeling
- Assess and document: Major transitions theory

### 📚 Citation Agent
**Focus**: Citation context and scholarly impact
**Tasks**:
- Track citations and impact of this active inference work
- Map connections to related works in the Friedman corpus
- Identify citing papers and downstream applications

### 🔗 Synthesis Agent
**Focus**: Cross-paper and cross-domain connections
**Tasks**:
- Connect themes: evolutionary transitions, EvoJump, Active Inference, major transitions, phenotypic complexity
- Link to related works in the docxology corpus
- Identify synergies across Active Inference, entomology, and cognitive security

### 💼 Consultant Agent
**Focus**: Practical application and knowledge transfer
**Tasks**:
- Evaluates practical applications and implementation strategies for this research
- Maps findings to industry challenges, Active Inference, and technological solutions
- Facilitates knowledge transfer to external teams and collaborators

## Extraction Log

- **Source PDF**: `2025_EvoJump.pdf`
- **PDF Status**: ✅ Available
- **Documentation Quality**: Hand-curated from direct PDF analysis

## Related Papers

See [BIBLIOGRAPHY.md](../../pages/BIBLIOGRAPHY.md) for the full publication catalog.